Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0910
         (536 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    29   0.33 
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    27   1.8  
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy...    27   2.3  
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    25   5.4  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    25   7.2  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    25   9.5  
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom...    25   9.5  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    25   9.5  
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo...    25   9.5  

>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 100 FVYNFSNGTLSVCVLNDRHTQFTKFEGVFDF 192
           F+ N   G L+V   N +  +FT F+G FDF
Sbjct: 2   FLQNLFLGFLAVVCANAQFAEFTAFDGKFDF 32


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = -1

Query: 119 FEKLYTKWSCERIESTLHSL 60
           F+K +T   CERIESTLH L
Sbjct: 510 FKKKFTT-ICERIESTLHEL 528


>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 384

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 123 PVRKVIHKMELRENREHTTLVELSMRD*QQASTASALVPNS 1
           P R+ +H M +R+ R H+T   ++  D    +  S   PNS
Sbjct: 281 PRRERLHAMRVRDIRSHSTNTTITSVDSASTALNSYSTPNS 321


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = +2

Query: 161 NLQSLKV--CLTFHFRHARRGIDAISLA 238
           NL+SL V  CL +HF ++  G+D+ +++
Sbjct: 216 NLKSLYVELCLVYHFHNSHLGMDSSTVS 243


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 170 FVNCVWRSFKTQTLNVPFEKLY 105
           F+NC W  F  +     FEKLY
Sbjct: 185 FINCNWPIFYKKQYMESFEKLY 206


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = -1

Query: 332 ASALTIRPDMFPVFTFLHRRSLAXDGARFLRAPEIS-----HRSLDEHVESEKSNT 180
           AS   +R +    F  L R+     G+    +P+ S     H+S DEH ES+ S+T
Sbjct: 518 ASPKAVRRESRSFFPSLTRKRSKFFGSSQSNSPKDSPLRDTHKSSDEHSESKHSHT 573


>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = -2

Query: 235 QRYRIDPSTSMS 200
           QRYRIDP+T MS
Sbjct: 210 QRYRIDPNTWMS 221


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 131 LNVPFEKLYTKWSCERIESTLHSLSC 54
           LN+P +  +  WSC+ + + L  LSC
Sbjct: 4   LNIPTKNTF-HWSCDPLFNELKRLSC 28


>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 569

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -3

Query: 177 FKLCKLCMAIVQNTNTQC 124
           F LCKL MA    TNT C
Sbjct: 372 FGLCKLNMAKTDRTNTFC 389


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,030,299
Number of Sequences: 5004
Number of extensions: 40082
Number of successful extensions: 111
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)