Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0910
         (536 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32880| Best HMM Match : rve (HMM E-Value=3.4e-05)                   31   0.60 
SB_13182| Best HMM Match : Pox_A32 (HMM E-Value=0.033)                 31   0.60 
SB_44331| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_34068| Best HMM Match : rve (HMM E-Value=5.7e-05)                   30   1.0  
SB_35991| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)                 29   1.8  
SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)                 29   1.8  
SB_29221| Best HMM Match : zf-C3HC4 (HMM E-Value=7.5e-10)              29   1.8  
SB_3752| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_17613| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_30325| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_8308| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.3  
SB_39665| Best HMM Match : Pox_A32 (HMM E-Value=0.023)                 27   9.7  
SB_45040| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_35887| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_32880| Best HMM Match : rve (HMM E-Value=3.4e-05)
          Length = 1264

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 19/67 (28%), Positives = 29/67 (43%)
 Frame = -1

Query: 287  FLHRRSLAXDGARFLRAPEISHRSLDEHVESEKSNTPSNFVNCVWRSFKTQTLNVPFEKL 108
            + HRR LA   A F R P +  R+ D HV ++    P+       +  + + L VP   L
Sbjct: 876  YTHRRELA---AAFTRTPAVRQRATDPHVAADDVTPPARPPLAAAQQTRDRPLAVPATAL 932

Query: 107  YTKWSCE 87
                 C+
Sbjct: 933  RPPGQCK 939


>SB_13182| Best HMM Match : Pox_A32 (HMM E-Value=0.033)
          Length = 745

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 19/67 (28%), Positives = 29/67 (43%)
 Frame = -1

Query: 287 FLHRRSLAXDGARFLRAPEISHRSLDEHVESEKSNTPSNFVNCVWRSFKTQTLNVPFEKL 108
           + HRR LA   A F R P +  R+ D HV ++    P+       +  + + L VP   L
Sbjct: 528 YTHRRELA---AAFTRTPAVRQRATDPHVAADDVTPPARPPLAAAQQTRDRPLAVPATAL 584

Query: 107 YTKWSCE 87
                C+
Sbjct: 585 RPPGQCK 591


>SB_44331| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1916

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 19/67 (28%), Positives = 29/67 (43%)
 Frame = -1

Query: 287  FLHRRSLAXDGARFLRAPEISHRSLDEHVESEKSNTPSNFVNCVWRSFKTQTLNVPFEKL 108
            +  RR LA   A F R P ++ R+ D HV ++    P+       +  K + L VP   L
Sbjct: 1659 YTRRRELA---AAFTRTPAVNQRATDPHVAADDVTPPARPPLAAAQQTKDRQLAVPATAL 1715

Query: 107  YTKWSCE 87
                 C+
Sbjct: 1716 RAPGQCK 1722


>SB_34068| Best HMM Match : rve (HMM E-Value=5.7e-05)
          Length = 1081

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 19/67 (28%), Positives = 29/67 (43%)
 Frame = -1

Query: 287 FLHRRSLAXDGARFLRAPEISHRSLDEHVESEKSNTPSNFVNCVWRSFKTQTLNVPFEKL 108
           +  RR LA   A F R P ++ R+ D HV ++    P+       +  K + L VP   L
Sbjct: 758 YTRRRELA---AAFTRTPAVNQRATDPHVAADDVTPPARPPLAAAQQTKDRPLAVPATAL 814

Query: 107 YTKWSCE 87
                C+
Sbjct: 815 RAPGQCK 821


>SB_35991| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)
          Length = 669

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/67 (26%), Positives = 29/67 (43%)
 Frame = -1

Query: 287 FLHRRSLAXDGARFLRAPEISHRSLDEHVESEKSNTPSNFVNCVWRSFKTQTLNVPFEKL 108
           +  RR LA   A F R P ++ R+ D HV ++    P+       +  K + L +P   L
Sbjct: 531 YTRRRELA---AAFTRTPAVNQRATDPHVAADGVTPPARPPLAAAQQTKDRPLAIPATAL 587

Query: 107 YTKWSCE 87
                C+
Sbjct: 588 RAPGQCK 594


>SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)
          Length = 953

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/67 (26%), Positives = 29/67 (43%)
 Frame = -1

Query: 287 FLHRRSLAXDGARFLRAPEISHRSLDEHVESEKSNTPSNFVNCVWRSFKTQTLNVPFEKL 108
           +  RR LA   A F R P ++ R+ D HV ++    P+       +  K + L +P   L
Sbjct: 718 YTRRRELA---AAFTRTPAVNQRATDPHVAADGVTPPARPPLAAAQQTKDRPLAIPATAL 774

Query: 107 YTKWSCE 87
                C+
Sbjct: 775 RAPGQCK 781


>SB_29221| Best HMM Match : zf-C3HC4 (HMM E-Value=7.5e-10)
          Length = 337

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -3

Query: 174 KLCKLCMAI-VQNTNTQCPVRKVIHKMELRENREHTTLVE 58
           + CK+C    VQ  N QCP+ ++      R N  + TLV+
Sbjct: 55  EFCKMCFTQNVQEANLQCPMCRIRISSWARRNARNGTLVD 94


>SB_3752| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1048

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 18/67 (26%), Positives = 28/67 (41%)
 Frame = -1

Query: 287 FLHRRSLAXDGARFLRAPEISHRSLDEHVESEKSNTPSNFVNCVWRSFKTQTLNVPFEKL 108
           +  +R LA   A F R P ++ R+ D HV ++    P+          K + L VP   L
Sbjct: 713 YTRKRELA---AAFTRTPAVNQRATDPHVVADDVTPPARPPLAATEQTKDRPLAVPATAL 769

Query: 107 YTKWSCE 87
                C+
Sbjct: 770 RAPGQCK 776


>SB_17613| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1004

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 170 SLKVCLTFHFRHARRGIDAISLAPVETAL 256
           +LK CL  + +HA R  DA S+ P E  L
Sbjct: 69  TLKNCLDSYLQHAPRWFDASSVVPREVEL 97


>SB_30325| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 682

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -1

Query: 239 APEISHRSLDEHVESEKSNTPSNFV-NCVWRSFKTQTLNVPFEKLYTKWSCE 87
           +P++S + LD  +  +   T + ++ N  W + +T  ++   E++YT WS E
Sbjct: 335 SPDLSRQDLDHGISRQ---TFTQYIRNQTWITGQTNQVSHAIEQVYTDWSNE 383


>SB_8308| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 89

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 95  SCERIESTLHSLSCLCATDSKRPLHPPSCRI 3
           +C     + H   C   ++  +PLHPP C I
Sbjct: 15  ACATETVSTHGRECSIHSEDAQPLHPPLCAI 45


>SB_39665| Best HMM Match : Pox_A32 (HMM E-Value=0.023)
          Length = 1640

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 284  LHRRSLAXDGARFLRAPEISHRSLDEHVESEKSNTPS 174
            LH R LA   A F R P ++ R+ D H  ++    P+
Sbjct: 1428 LHTRELA---AAFTRTPAVNQRATDPHAAADGGTPPA 1461


>SB_45040| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +3

Query: 381 FGFLISHRPMXKSCTYRERRPXGXCGKXNRWXFCXRXCXPPXRGGXR 521
           FGFL++      S  Y+E    G   + + W  C R C    RG  R
Sbjct: 209 FGFLVA-----LSYVYKELSVEGGYSEWSNWSVCTRSCGQGLRGRIR 250


>SB_35887| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 983

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -1

Query: 176 SNFVNCVWRSFKTQTLNVPFEKLYTK-WSCERIESTLHSLSCLCATDSK 33
           S F   + ++ KT+T N      Y K W+    E +  +LS L ATDSK
Sbjct: 751 SCFTADLCKTVKTETKNYRPTVAYVKRWTTALAEDSAMTLSTLPATDSK 799


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,385,909
Number of Sequences: 59808
Number of extensions: 331321
Number of successful extensions: 934
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)