Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0910
         (536 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69883-4|CAA93742.2|  480|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z68014-1|CAA92023.1|  335|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U61950-6|AAC24291.1|  528|Caenorhabditis elegans Nuclear hormone...    27   8.6  
U61950-5|AAL02466.1|  576|Caenorhabditis elegans Nuclear hormone...    27   8.6  
AF273791-1|AAG15139.1|  525|Caenorhabditis elegans nuclear recep...    27   8.6  
AF273790-1|AAG15138.1|  534|Caenorhabditis elegans nuclear recep...    27   8.6  
AF273787-1|AAG15135.1|  527|Caenorhabditis elegans nuclear recep...    27   8.6  
AC006712-7|AAK39318.2|  264|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z69883-4|CAA93742.2|  480|Caenorhabditis elegans Hypothetical
           protein C27C12.5 protein.
          Length = 480

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 155 WRSFKTQTLNVPFEKLYT 102
           WR F+T TL +  +K+YT
Sbjct: 184 WREFETNTLKIKLKKMYT 201


>Z68014-1|CAA92023.1|  335|Caenorhabditis elegans Hypothetical
           protein W04G3.1 protein.
          Length = 335

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 310 RTCFLCSLFYIDDHSLMTERGFYGRQRYRIDPST 209
           RT   C + Y   + +M E GF  ++ YR+   T
Sbjct: 119 RTTMFCPVAYFSPNPIMGEEGFSMQEAYRVVSKT 152


>U61950-6|AAC24291.1|  528|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 46, isoform a protein.
          Length = 528

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 181 VFDFSLSTCSSRDRCDISGARRNRAPSXASDRRCKKVNTGNMSGRIVNADASK 339
           VF+  +  CS+ + CDI+   RNR  +     R +    G M+ + V  + SK
Sbjct: 127 VFEGRVYMCSADNHCDITNESRNRCRAC----RLRNCLEGGMNPKHVREERSK 175


>U61950-5|AAL02466.1|  576|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 46, isoform b protein.
          Length = 576

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 181 VFDFSLSTCSSRDRCDISGARRNRAPSXASDRRCKKVNTGNMSGRIVNADASK 339
           VF+  +  CS+ + CDI+   RNR  +     R +    G M+ + V  + SK
Sbjct: 175 VFEGRVYMCSADNHCDITNESRNRCRAC----RLRNCLEGGMNPKHVREERSK 223


>AF273791-1|AAG15139.1|  525|Caenorhabditis elegans nuclear receptor
           NHR-46 protein.
          Length = 525

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 181 VFDFSLSTCSSRDRCDISGARRNRAPSXASDRRCKKVNTGNMSGRIVNADASK 339
           VF+  +  CS+ + CDI+   RNR  +     R +    G M+ + V  + SK
Sbjct: 124 VFEGRVYMCSADNHCDITNESRNRCRAC----RLRNCLEGGMNPKHVREERSK 172


>AF273790-1|AAG15138.1|  534|Caenorhabditis elegans nuclear receptor
           NHR-46 protein.
          Length = 534

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 181 VFDFSLSTCSSRDRCDISGARRNRAPSXASDRRCKKVNTGNMSGRIVNADASK 339
           VF+  +  CS+ + CDI+   RNR  +     R +    G M+ + V  + SK
Sbjct: 133 VFEGRVYMCSADNHCDITNESRNRCRAC----RLRNCLEGGMNPKHVREERSK 181


>AF273787-1|AAG15135.1|  527|Caenorhabditis elegans nuclear receptor
           NHR-46 protein.
          Length = 527

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 181 VFDFSLSTCSSRDRCDISGARRNRAPSXASDRRCKKVNTGNMSGRIVNADASK 339
           VF+  +  CS+ + CDI+   RNR  +     R +    G M+ + V  + SK
Sbjct: 126 VFEGRVYMCSADNHCDITNESRNRCRAC----RLRNCLEGGMNPKHVREERSK 174


>AC006712-7|AAK39318.2|  264|Caenorhabditis elegans Hypothetical
           protein Y119C1B.9 protein.
          Length = 264

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
 Frame = -1

Query: 227 SHRSLDEHVESEKSNTPSNFVNCVWRSF----KTQTLNVPFEKLYTKWSCE-RIESTLHS 63
           S  SL + V+ +    PS+ VN  WR F    K +  N   E++  + +CE R+ S   S
Sbjct: 64  SFTSLPQPVQIQWMFRPSDSVNAQWREFPCAKKEEHKNCQKEEIIVESNCEVRMNSLKMS 123

Query: 62  LSCLCA 45
            +  CA
Sbjct: 124 GTYKCA 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,776,285
Number of Sequences: 27780
Number of extensions: 244782
Number of successful extensions: 720
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)