Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0910
         (536 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   1.1  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   8.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.0  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 185 LTFHFRHARRGIDAISLAPVETALRH 262
           LT H+R  RRG    ++  +    RH
Sbjct: 129 LTLHYRSKRRGFVYYTMGQIREVARH 154


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 303 HVRADRQRRCEQ 338
           HVR+ R+  CEQ
Sbjct: 442 HVRSSRESSCEQ 453


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 304 CFLCSLFYIDDHSLMTE 254
           CF C+ + I DH  +T+
Sbjct: 609 CFNCTQYQIRDHKDVTQ 625


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,421
Number of Sequences: 438
Number of extensions: 2821
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)