Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0910
         (536 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35735.1 68418.m04276 auxin-responsive family protein similar...    29   1.5  
At2g15640.1 68415.m01791 F-box family protein contains Pfam PF00...    29   1.5  
At4g19690.2 68417.m02892 iron-responsive transporter (IRT1) iden...    29   2.6  
At5g61370.1 68418.m07700 pentatricopeptide (PPR) repeat-containi...    28   3.4  
At3g62770.2 68416.m07051 transport protein-related weak similari...    27   6.0  
At3g62770.1 68416.m07052 transport protein-related weak similari...    27   6.0  
At3g51740.1 68416.m05673 leucine-rich repeat transmembrane prote...    27   6.0  
At3g07390.1 68416.m00881 auxin-responsive protein / auxin-induce...    27   6.0  

>At5g35735.1 68418.m04276 auxin-responsive family protein similar to
           auxin-induced protein AIR12 GI:11357190 [Arabidopsis
           thaliana]
          Length = 404

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
 Frame = +1

Query: 25  SGRLLSVAHRQLN-----ECSVLSIL-SQLHFVYNFSNGTLSV 135
           +G+ L   HR  N     +CS LS L S LH+ YN  NGT+S+
Sbjct: 24  NGQSLCNTHRFTNNLAFADCSDLSALGSFLHWTYNEQNGTVSI 66


>At2g15640.1 68415.m01791 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 426

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -1

Query: 164 NCVWRSFKTQTLNVPFEK 111
           NCVWR F T  L  P+EK
Sbjct: 69  NCVWRFFSTPQLENPYEK 86


>At4g19690.2 68417.m02892 iron-responsive transporter (IRT1)
           identical to Fe(II) transport protein [Arabidopsis
           thaliana] gi|1353266|gb|AAB01678; member of the Zinc
           (Zn2+)-Iron (Fe2+) permease (ZIP) family, PMID:11500563
          Length = 339

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +1

Query: 67  CSVLSILSQLHFVYNFSNGTLSVCVLNDRHTQFTKFEGVFDFSLST 204
           C++  +++ L F   F    L  C+L   +T   KF   F F+++T
Sbjct: 212 CTIKGLIAALCFHQMFEGMGLGGCILQAEYTNMKKFVMAFFFAVTT 257


>At5g61370.1 68418.m07700 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 487

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = -1

Query: 251 RFLRAPEISHRSLDEHVESEKSNTPSNFVNCVWRSFKTQTLNVPFEKLYTKWSCERIEST 72
           R + +P      L+E++     +  SN V  V  S K +T      + ++ WSC+ + S+
Sbjct: 42  RIVSSPVGGLDDLEENLNQVSVSPSSNLVTQVIESCKNETSPRRLLRFFS-WSCKSLGSS 100

Query: 71  LH 66
           LH
Sbjct: 101 LH 102


>At3g62770.2 68416.m07051 transport protein-related weak similarity
           to Gsa12p [Pichia pastoris] GI:18307769; contains 1
           WD-40 repeat (PF00400); putative proteins - different
           species
          Length = 432

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +1

Query: 10  HEGGCSGRLL---SVAHRQLNECSVLSILSQLHFVYNFSN 120
           H+G C G L     V   +L    ++ +L Q  FVYNFS+
Sbjct: 154 HQGRCIGELSFRSDVRSVRLRRDRIIVVLEQKIFVYNFSD 193


>At3g62770.1 68416.m07052 transport protein-related weak similarity
           to Gsa12p [Pichia pastoris] GI:18307769; contains 1
           WD-40 repeat (PF00400); putative proteins - different
           species
          Length = 307

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +1

Query: 10  HEGGCSGRLL---SVAHRQLNECSVLSILSQLHFVYNFSN 120
           H+G C G L     V   +L    ++ +L Q  FVYNFS+
Sbjct: 154 HQGRCIGELSFRSDVRSVRLRRDRIIVVLEQKIFVYNFSD 193


>At3g51740.1 68416.m05673 leucine-rich repeat transmembrane protein
           kinase, putative brassinosteroid-insensitive protein
           BRI1 - Arabidopsis thaliana, PIR:T09356
          Length = 836

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
 Frame = +1

Query: 37  LSVAHRQLN-----ECSVLSILSQLHFVYNFSNGTL 129
           +S++H QL+     EC  L  L  L F YN  NGT+
Sbjct: 268 VSISHNQLSGSIPRECGGLPHLQSLDFSYNSINGTI 303


>At3g07390.1 68416.m00881 auxin-responsive protein / auxin-induced
           protein (AIR12) identical (with 7 residue gap) to
           auxin-induced protein AIR12 GI:11357190 [Arabidopsis
           thaliana]
          Length = 273

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 61  NECSVLSIL-SQLHFVYNFSNGTLSV 135
           + C  L +L S LH+ YN SN +LSV
Sbjct: 62  DSCEDLPVLNSYLHYTYNSSNSSLSV 87


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,885,533
Number of Sequences: 28952
Number of extensions: 218569
Number of successful extensions: 643
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)