Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0908
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    27   3.7  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    26   6.5  
SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr 2...    25   8.6  

>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -2

Query: 137 LQVTLNLLQDLDLARRPVPRTLGPATLK 54
           L V L  L DL +  RP P  LGP   K
Sbjct: 756 LSVDLATLGDLKVVERPPPMNLGPHAFK 783


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = -3

Query: 607 CGXQSPSNTILYLASXQAQQSGMDRDVSSQIRLSTDRLQRTNDSNXHTPSPSKARIL-NQ 431
           C  Q   N +    +   + +      ++++ ++ DRL  T  S   TPSP+++    + 
Sbjct: 377 CASQDKKNCVFSRVTKYIK-AARRASTANRVSVAKDRLSLTPSSTPSTPSPAESLPQPSN 435

Query: 430 PVXLST*PGLQFWADR 383
           P  +      +FW D+
Sbjct: 436 PTSVYAKSLKEFWLDK 451


>SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 338

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 193 EICRDSGRFPHS*RSTTVCGLKIILDPLNPDTR 291
           E+ +D    P+  R++ + GL+ IL  LNPDT+
Sbjct: 250 EVMKDKVHQPY--RASLIPGLQNILATLNPDTQ 280


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,977,806
Number of Sequences: 5004
Number of extensions: 58751
Number of successful extensions: 161
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)