Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0908
         (741 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31341| Best HMM Match : UDP-g_GGTase (HMM E-Value=0)                34   0.11 
SB_59289| Best HMM Match : Lectin_C (HMM E-Value=2.1e-05)              30   1.7  
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)                      28   6.9  
SB_34156| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  

>SB_31341| Best HMM Match : UDP-g_GGTase (HMM E-Value=0)
          Length = 1031

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -2

Query: 605 RXSEPLEHHPIFS-VVAGAAVGDGQRRVLADSFVN*PSSANQRLEXSYTIAFKSTHPEPA 429
           R  E L   P+ S +VA  A  DG+R V A +F    SSAN R+   +  + K  HPEPA
Sbjct: 625 RMGEDLSLKPLTSWIVADLASFDGRRLVKA-AFEQMKSSANVRVGLLHNPSTKPGHPEPA 683


>SB_59289| Best HMM Match : Lectin_C (HMM E-Value=2.1e-05)
          Length = 769

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 96 SQASAADTRPSHTKILRLPILFGHK 22
          ++ASAAD RP HT  L  P++ G K
Sbjct: 8  NEASAADRRPGHTARLHSPLMAGPK 32


>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
          Length = 2442

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 331 DTLTKFDEECTNSVVEAD 384
           D++TK DEE TNSV + D
Sbjct: 483 DSITKLDEELTNSVTQQD 500


>SB_34156| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +2

Query: 65  LGLVSAALACELNPGPGVGSKSPGDNHYRLIVNGEVERYAPDQR-YVVTLVGSR 223
           LGL +A++  + +    +G    G++  RL+  G VERY+P+ R + V+L   R
Sbjct: 172 LGLSAASI--DNSSSVVMGVVGLGNDTARLVYTGGVERYSPESRAFAVSLFDQR 223


>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2749

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 123 EPTPGPGFSSQASAADTRPSHTKILRLPIL 34
           +PTP P   S     DTRP    I R+P++
Sbjct: 582 QPTPPPQTPSATRRTDTRPRPVSIERVPLM 611


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,461,918
Number of Sequences: 59808
Number of extensions: 486259
Number of successful extensions: 1414
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1412
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)