Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0908
(741 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK074803-1|BAC11217.1| 807|Homo sapiens protein ( Homo sapiens ... 70 1e-11
AB051390-1|BAB18461.1| 807|Homo sapiens VSGP/F-spondin protein. 70 1e-11
AB018305-1|BAA34482.2| 724|Homo sapiens KIAA0762 protein protein. 70 1e-11
U79716-1|AAC51105.1| 3460|Homo sapiens reelin protein. 34 0.62
AC073208-1|AAP22355.1| 44|Homo sapiens unknown protein. 34 0.62
>AK074803-1|BAC11217.1| 807|Homo sapiens protein ( Homo sapiens
cDNA FLJ90322 fis, clone NT2RP2001755, highly similar to
Rattus norvegicus f-spondin mRNA. ).
Length = 807
Score = 69.7 bits (163), Expect = 1e-11
Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 9/160 (5%)
Frame = +1
Query: 250 GLKIILDPLNPDTRRAPSKQGQFQLFADTLTKFDEECTNSVVEADDLPKTEVQVMWKAPP 429
G +I N + + G FQ+ + T+F C +V E+ +T +QV W APP
Sbjct: 92 GFTLIALRENREGDKEEDHAGTFQIIDEEETQFMSNCPVAVTESTPRRRTRIQVFWIAPP 151
Query: 430 AGSGCVLLKAMVYXNSSRWFAEDGQLTNESARTRLCPSPTAAPATTLN--IGWCSRGSDX 603
AG+GCV+LKA + +F ++G LT +LC + T + C+ G+
Sbjct: 152 AGTGCVILKASIVQKRIIYFQDEGSLTK-----KLCEQDSTFDGVTDKPILDCCACGTAK 206
Query: 604 RR-----HIQRXSRPKLCX--LTHFSDLIGATHPKNFTFW 702
R + + PK H+S +IG +H KN+ W
Sbjct: 207 YRLTFYGNWSEKTHPKDYPRRANHWSAIIGGSHSKNYVLW 246
Score = 46.4 bits (105), Expect = 1e-04
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 7/53 (13%)
Frame = +3
Query: 501 SVDKRICED-------TSLSIPDCCACXDAKYRMVFEGL*XPQTHPKXFPTQA 638
S+ K++CE T I DCCAC AKYR+ F G +THPK +P +A
Sbjct: 176 SLTKKLCEQDSTFDGVTDKPILDCCACGTAKYRLTFYGNWSEKTHPKDYPRRA 228
>AB051390-1|BAB18461.1| 807|Homo sapiens VSGP/F-spondin protein.
Length = 807
Score = 69.7 bits (163), Expect = 1e-11
Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 9/160 (5%)
Frame = +1
Query: 250 GLKIILDPLNPDTRRAPSKQGQFQLFADTLTKFDEECTNSVVEADDLPKTEVQVMWKAPP 429
G +I N + + G FQ+ + T+F C +V E+ +T +QV W APP
Sbjct: 92 GFTLIALRENREGDKEEDHAGTFQIIDEEETQFMSNCPVAVTESTPRRRTRIQVFWIAPP 151
Query: 430 AGSGCVLLKAMVYXNSSRWFAEDGQLTNESARTRLCPSPTAAPATTLN--IGWCSRGSDX 603
AG+GCV+LKA + +F ++G LT +LC + T + C+ G+
Sbjct: 152 AGTGCVILKASIVQKRIIYFQDEGSLTK-----KLCEQDSTFDGVTDKPILDCCACGTAK 206
Query: 604 RR-----HIQRXSRPKLCX--LTHFSDLIGATHPKNFTFW 702
R + + PK H+S +IG +H KN+ W
Sbjct: 207 YRLTFYGNWSEKTHPKDYPRRANHWSAIIGGSHSKNYVLW 246
Score = 46.4 bits (105), Expect = 1e-04
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 7/53 (13%)
Frame = +3
Query: 501 SVDKRICED-------TSLSIPDCCACXDAKYRMVFEGL*XPQTHPKXFPTQA 638
S+ K++CE T I DCCAC AKYR+ F G +THPK +P +A
Sbjct: 176 SLTKKLCEQDSTFDGVTDKPILDCCACGTAKYRLTFYGNWSEKTHPKDYPRRA 228
>AB018305-1|BAA34482.2| 724|Homo sapiens KIAA0762 protein protein.
Length = 724
Score = 69.7 bits (163), Expect = 1e-11
Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 9/160 (5%)
Frame = +1
Query: 250 GLKIILDPLNPDTRRAPSKQGQFQLFADTLTKFDEECTNSVVEADDLPKTEVQVMWKAPP 429
G +I N + + G FQ+ + T+F C +V E+ +T +QV W APP
Sbjct: 9 GFTLIALRENREGDKEEDHAGTFQIIDEEETQFMSNCPVAVTESTPRRRTRIQVFWIAPP 68
Query: 430 AGSGCVLLKAMVYXNSSRWFAEDGQLTNESARTRLCPSPTAAPATTLN--IGWCSRGSDX 603
AG+GCV+LKA + +F ++G LT +LC + T + C+ G+
Sbjct: 69 AGTGCVILKASIVQKRIIYFQDEGSLTK-----KLCEQDSTFDGVTDKPILDCCACGTAK 123
Query: 604 RR-----HIQRXSRPKLCX--LTHFSDLIGATHPKNFTFW 702
R + + PK H+S +IG +H KN+ W
Sbjct: 124 YRLTFYGNWSEKTHPKDYPRRANHWSAIIGGSHSKNYVLW 163
Score = 46.4 bits (105), Expect = 1e-04
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 7/53 (13%)
Frame = +3
Query: 501 SVDKRICED-------TSLSIPDCCACXDAKYRMVFEGL*XPQTHPKXFPTQA 638
S+ K++CE T I DCCAC AKYR+ F G +THPK +P +A
Sbjct: 93 SLTKKLCEQDSTFDGVTDKPILDCCACGTAKYRLTFYGNWSEKTHPKDYPRRA 145
>U79716-1|AAC51105.1| 3460|Homo sapiens reelin protein.
Length = 3460
Score = 33.9 bits (74), Expect = 0.62
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 358 CTNSVVEADDLPKTEVQVMWKAPPAGSGCV 447
C+ LP T + +W APPAG+GCV
Sbjct: 126 CSVVASHVSHLPTTNLSFIWIAPPAGTGCV 155
>AC073208-1|AAP22355.1| 44|Homo sapiens unknown protein.
Length = 44
Score = 33.9 bits (74), Expect = 0.62
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 358 CTNSVVEADDLPKTEVQVMWKAPPAGSGCV 447
C+ LP T + +W APPAG+GCV
Sbjct: 13 CSVVASHVSHLPTTNLSFIWIAPPAGTGCV 42
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,773,572
Number of Sequences: 237096
Number of extensions: 2350878
Number of successful extensions: 6341
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6341
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8847149012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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