Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0908
(741 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41264-7|AAA82427.2| 819|Caenorhabditis elegans Hypothetical pr... 56 2e-08
U80954-4|AAB38097.2| 426|Caenorhabditis elegans Hypothetical pr... 30 1.5
L15314-2|AAF99983.1| 322|Caenorhabditis elegans Hypothetical pr... 29 4.6
AY572975-1|AAT77228.1| 580|Caenorhabditis elegans KQT-3 potassi... 29 4.6
AL032648-2|CAA21699.2| 621|Caenorhabditis elegans Hypothetical ... 29 4.6
Z97628-3|CAB10727.1| 819|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z79755-13|CAB02114.1| 819|Caenorhabditis elegans Hypothetical p... 28 6.0
U41030-6|AAA82365.1| 375|Caenorhabditis elegans Hypothetical pr... 28 6.0
AC087079-13|AAK27866.1| 787|Caenorhabditis elegans Nuclear pore... 28 6.0
Z79753-4|CAB02084.2| 396|Caenorhabditis elegans Hypothetical pr... 28 8.0
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 28 8.0
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 8.0
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 8.0
AF078157-5|AAN84817.1| 379|Caenorhabditis elegans Hypothetical ... 28 8.0
AC006695-5|ABS83861.1| 1769|Caenorhabditis elegans Titin family ... 28 8.0
AC006695-4|ABS83860.1| 1769|Caenorhabditis elegans Titin family ... 28 8.0
AC006695-3|ABS83859.1| 1769|Caenorhabditis elegans Titin family ... 28 8.0
AC006695-2|ABS83858.1| 1769|Caenorhabditis elegans Titin family ... 28 8.0
AC006695-1|ABS83857.1| 1769|Caenorhabditis elegans Titin family ... 28 8.0
AC006662-2|AAL06035.1| 535|Caenorhabditis elegans Hypothetical ... 28 8.0
AC006662-1|AAM98008.2| 707|Caenorhabditis elegans Hypothetical ... 28 8.0
AC006638-10|AAK85488.1| 242|Caenorhabditis elegans Hypothetical... 28 8.0
>U41264-7|AAA82427.2| 819|Caenorhabditis elegans Hypothetical
protein F10E7.4 protein.
Length = 819
Score = 56.4 bits (130), Expect = 2e-08
Identities = 39/124 (31%), Positives = 55/124 (44%), Gaps = 9/124 (7%)
Frame = +1
Query: 358 CTNSVVEADDLP-KTEVQVMWKAPPAGSGCVLLKAMVYXNSSRWFAEDGQLTNE---SAR 525
C S V +L KT V +MWKAP SGCV+ +A V WF E LT +
Sbjct: 118 CRQSGVSHANLKSKTSVHMMWKAPEVSSGCVVFRASVIETKYIWFTEAEGLTVKLCIQKG 177
Query: 526 TRLC-----PSPTAAPATTLNIGWCSRGSDXRRHIQRXSRPKLCXLTHFSDLIGATHPKN 690
T++ PS T G ++ P L LTHF+D++G++H N
Sbjct: 178 TQILKPVDDPSATCCACDIAQYDLEFTGI-WSKNTHPKDYPTLEHLTHFTDMLGSSHSSN 236
Query: 691 FTFW 702
++ W
Sbjct: 237 YSLW 240
Score = 37.5 bits (83), Expect = 0.010
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +3
Query: 549 CCACXDAKYRMVFEGL*XPQTHPKXFPT 632
CCAC A+Y + F G+ THPK +PT
Sbjct: 191 CCACDIAQYDLEFTGIWSKNTHPKDYPT 218
Score = 37.1 bits (82), Expect = 0.013
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Frame = +2
Query: 92 CELNPGPGVGSKSPGDNHYRLIVNGEVER-------YAPDQRYVVTLVGSRTHDVVQQFA 250
C + P G KSPG N Y + +NG + + P + Y V++ G RT V+ F
Sbjct: 27 CTIKPYEAKGDKSPGSNGYVIEINGTTTKSMDISKGFVPGEIYKVSIRGWRTQYTVKTFR 86
Query: 251 GSK*SLIL*TRTQGG 295
G S + T G
Sbjct: 87 GFVVSSLFEDNTSAG 101
>U80954-4|AAB38097.2| 426|Caenorhabditis elegans Hypothetical
protein T07F8.2 protein.
Length = 426
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = -3
Query: 541 MDRDVSSQIRLSTDRLQRTNDSNXHTPSPSKARILNQPV 425
M+RD+ + IR +T+R +R+ S H SPS R L Q V
Sbjct: 323 MNRDLRNLIRFATERRKRSTMS--HAASPSTNRSLRQQV 359
>L15314-2|AAF99983.1| 322|Caenorhabditis elegans Hypothetical
protein K06H7.7 protein.
Length = 322
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = -2
Query: 188 PAHIAQLLR*QSACSDC----LQVTLNLLQDLDLARRPVP 81
P H ++L+ +C DC L V + L LDL+ P+P
Sbjct: 170 PGHFVEMLKEDCSCRDCGSADLAVKVRLTVPLDLSDIPIP 209
>AY572975-1|AAT77228.1| 580|Caenorhabditis elegans KQT-3 potassium
channel protein.
Length = 580
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -3
Query: 571 LASXQAQQSGMDRDVSSQIRLSTDRLQRTNDSNXHTPSPSKARILNQPV 425
L+ + Q S +DR V S R + D N T SPS ++++PV
Sbjct: 504 LSRLELQMSSLDRKVESSNRTLNALYRLMADRNSLTISPSPPALISRPV 552
>AL032648-2|CAA21699.2| 621|Caenorhabditis elegans Hypothetical
protein Y54G9A.3 protein.
Length = 621
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -3
Query: 571 LASXQAQQSGMDRDVSSQIRLSTDRLQRTNDSNXHTPSPSKARILNQPV 425
L+ + Q S +DR V S R + D N T SPS ++++PV
Sbjct: 545 LSRLELQMSSLDRKVESSNRTLNALYRLMADRNSLTISPSPPALISRPV 593
>Z97628-3|CAB10727.1| 819|Caenorhabditis elegans Hypothetical
protein F43G9.12 protein.
Length = 819
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 271 PLNPDTRRAPSKQGQFQLFA-DTLTKFDEECTNSVVEADDLPKTE 402
PL+ DT++ SK + +L D DEECTN A +L +TE
Sbjct: 188 PLD-DTQKLKSKSERNRLIREDENDDSDEECTNKFYSARELLRTE 231
>Z79755-13|CAB02114.1| 819|Caenorhabditis elegans Hypothetical
protein F43G9.12 protein.
Length = 819
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 271 PLNPDTRRAPSKQGQFQLFA-DTLTKFDEECTNSVVEADDLPKTE 402
PL+ DT++ SK + +L D DEECTN A +L +TE
Sbjct: 188 PLD-DTQKLKSKSERNRLIREDENDDSDEECTNKFYSARELLRTE 231
>U41030-6|AAA82365.1| 375|Caenorhabditis elegans Hypothetical
protein C44C1.5a protein.
Length = 375
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 291 PCVRVQRIKDYFEPANCCTTS*VRE 217
PCV + + DYF P C T + E
Sbjct: 306 PCVTLNSVDDYFSPVECIPTLDIME 330
>AC087079-13|AAK27866.1| 787|Caenorhabditis elegans Nuclear pore
complex protein protein13, isoform a protein.
Length = 787
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 248 QTVVLRHECGNRPESRHISDPAHIAQLLR*QSACSD 141
+ + L HECG R +S H++ AH LR +D
Sbjct: 448 RAIYLLHECGQRVDSVHVAVLAHKLGYLRMSKKSTD 483
>Z79753-4|CAB02084.2| 396|Caenorhabditis elegans Hypothetical
protein F20G2.4 protein.
Length = 396
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/50 (24%), Positives = 26/50 (52%)
Frame = -2
Query: 464 TIAFKSTHPEPAGGAFHMTWTSVLGRSSASTTEFVHSSSNLVKVSAKSWN 315
TI+F + PEP F+ T+ + G ++++ + N++ + +WN
Sbjct: 284 TISF-NYKPEPVSDGFYSTFVYITGEANSTIEITMEGLENVICTAGCTWN 332
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +1
Query: 262 ILDPLNPDTRRAPSKQGQFQLFADTLTKFDEECTNSVVEADDLPKTEVQVMWKAPPA 432
IL+P + R +PS +G+ LFA +T E +++ L K V PPA
Sbjct: 570 ILNPKKREERLSPSGKGKHLLFAPRITAHPSESVFKILDGSPL-KLRVMAS-SLPPA 624
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +1
Query: 262 ILDPLNPDTRRAPSKQGQFQLFADTLTKFDEECTNSVVEADDLPKTEVQVMWKAPPA 432
IL+P + R +PS +G+ LFA +T E +++ L K V PPA
Sbjct: 570 ILNPKKREERLSPSGKGKHLLFAPRITAHPSESVFKILDGSPL-KLRVMAS-SLPPA 624
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +1
Query: 262 ILDPLNPDTRRAPSKQGQFQLFADTLTKFDEECTNSVVEADDLPKTEVQVMWKAPPA 432
IL+P + R +PS +G+ LFA +T E +++ L K V PPA
Sbjct: 570 ILNPKKREERLSPSGKGKHLLFAPRITAHPSESVFKILDGSPL-KLRVMAS-SLPPA 624
>AF078157-5|AAN84817.1| 379|Caenorhabditis elegans Hypothetical
protein F25E5.7 protein.
Length = 379
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 305 LLGALLVSGFKGSRIILSPQTVVLRHECGNRP 210
+L +LL GF SRII + VL+ CG P
Sbjct: 5 ILISLLFLGFSSSRIIGEKENQVLQSYCGRTP 36
>AC006695-5|ABS83861.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform g protein.
Length = 1769
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +1
Query: 262 ILDPLNPDTRRAPSKQGQFQLFADTLTKFDEECTNSVVEADDLPKTEVQVMWKAPPA 432
IL+P + R +PS +G+ LFA +T E +++ L K V PPA
Sbjct: 570 ILNPKKREERLSPSGKGKHLLFAPRITAHPSESVFKILDGSPL-KLRVMAS-SLPPA 624
>AC006695-4|ABS83860.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform f protein.
Length = 1769
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +1
Query: 262 ILDPLNPDTRRAPSKQGQFQLFADTLTKFDEECTNSVVEADDLPKTEVQVMWKAPPA 432
IL+P + R +PS +G+ LFA +T E +++ L K V PPA
Sbjct: 570 ILNPKKREERLSPSGKGKHLLFAPRITAHPSESVFKILDGSPL-KLRVMAS-SLPPA 624
>AC006695-3|ABS83859.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform e protein.
Length = 1769
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +1
Query: 262 ILDPLNPDTRRAPSKQGQFQLFADTLTKFDEECTNSVVEADDLPKTEVQVMWKAPPA 432
IL+P + R +PS +G+ LFA +T E +++ L K V PPA
Sbjct: 570 ILNPKKREERLSPSGKGKHLLFAPRITAHPSESVFKILDGSPL-KLRVMAS-SLPPA 624
>AC006695-2|ABS83858.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform d protein.
Length = 1769
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +1
Query: 262 ILDPLNPDTRRAPSKQGQFQLFADTLTKFDEECTNSVVEADDLPKTEVQVMWKAPPA 432
IL+P + R +PS +G+ LFA +T E +++ L K V PPA
Sbjct: 570 ILNPKKREERLSPSGKGKHLLFAPRITAHPSESVFKILDGSPL-KLRVMAS-SLPPA 624
>AC006695-1|ABS83857.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform c protein.
Length = 1769
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +1
Query: 262 ILDPLNPDTRRAPSKQGQFQLFADTLTKFDEECTNSVVEADDLPKTEVQVMWKAPPA 432
IL+P + R +PS +G+ LFA +T E +++ L K V PPA
Sbjct: 570 ILNPKKREERLSPSGKGKHLLFAPRITAHPSESVFKILDGSPL-KLRVMAS-SLPPA 624
>AC006662-2|AAL06035.1| 535|Caenorhabditis elegans Hypothetical
protein H23L24.3a protein.
Length = 535
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = -2
Query: 641 QSLGREXLWMCLRXSEPLEHHPIFSVVAGAAVGDGQRRVLADSFVN*PSSANQRLEXSYT 462
Q+LG+ +W ++ E + I+ + + + + +R L +V P N +L+ +
Sbjct: 66 QALGKTEMWFIVKPDEGAQGTGIYLINSPNQIRNVDQRQLVQEYVADPLLMNDKLKFDFR 125
Query: 461 I--AFKSTHP 438
+ KS +P
Sbjct: 126 VYGVIKSINP 135
>AC006662-1|AAM98008.2| 707|Caenorhabditis elegans Hypothetical
protein H23L24.3b protein.
Length = 707
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = -2
Query: 641 QSLGREXLWMCLRXSEPLEHHPIFSVVAGAAVGDGQRRVLADSFVN*PSSANQRLEXSYT 462
Q+LG+ +W ++ E + I+ + + + + +R L +V P N +L+ +
Sbjct: 238 QALGKTEMWFIVKPDEGAQGTGIYLINSPNQIRNVDQRQLVQEYVADPLLMNDKLKFDFR 297
Query: 461 I--AFKSTHP 438
+ KS +P
Sbjct: 298 VYGVIKSINP 307
>AC006638-10|AAK85488.1| 242|Caenorhabditis elegans Hypothetical
protein F41G4.8 protein.
Length = 242
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +2
Query: 62 WLGLVSAALACELNPGPGVGSKSPGDNHY--RLIVNGEVERYAPDQRYVVT 208
+L L+SAA++C+ G G ++ D ++ RLI N + Y + Y +T
Sbjct: 5 FLYLLSAAVSCQFQDFEGSGEEALIDEYWLQRLIENVGIPHYLTQKAYQLT 55
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,922,508
Number of Sequences: 27780
Number of extensions: 352678
Number of successful extensions: 920
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -