Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0908
         (741 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.3  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.3  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   3.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.0  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   9.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   9.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 373  VEADDLPKTEVQVMWKAPP 429
            +  DDL +  ++V WK PP
Sbjct: 983  IRVDDLDQHTLKVTWKPPP 1001


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 211 GRFPHS*RSTTVCGLKIILDPLNPDTRRAPSKQGQF 318
           GR  +S R T   G  + L+    DT+R P + G F
Sbjct: 116 GRVLYSSRLTIKAGCPMNLENFPMDTQRCPLQFGSF 151


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +2

Query: 62  WLGLVSAALACELNPGPGVGSKSPGD 139
           +L   S  LA E    PG GSK P D
Sbjct: 42  FLQCASLKLAFEPRRNPGPGSKGPRD 67


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -2

Query: 110 DLDLARRPVPRTLGPATLKFSDCPFYLGIRRTS 12
           D D  R P       AT +    PF +G RRTS
Sbjct: 383 DSDGIRLPCREVEAAATARNVVAPFLIGSRRTS 415


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 302 LGALLVSGFKGSRIILS 252
           L A++VSG KGS I +S
Sbjct: 227 LKAMVVSGSKGSNINIS 243


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = +1

Query: 400 EVQVMWKAPPAGSGCVLLKAMVYXNSSRWF 489
           E+    K+    + CVL    ++ + S WF
Sbjct: 471 EISTRPKSNTVENACVLKNTEIFKDKSDWF 500


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,009
Number of Sequences: 438
Number of extensions: 4079
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)