Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0908
         (741 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19020.1 68418.m02260 pentatricopeptide (PPR) repeat-containi...    33   0.20 
At4g00460.1 68417.m00063 expressed protein contains Pfam profile...    33   0.20 
At5g51490.1 68418.m06386 pectinesterase family protein contains ...    30   1.9  
At2g26920.1 68415.m03229 ubiquitin-associated (UBA)/TS-N domain-...    28   5.7  
At4g15320.1 68417.m02344 cellulose synthase family protein simil...    28   7.5  
At1g27020.1 68414.m03294 expressed protein                             28   7.5  

>At5g19020.1 68418.m02260 pentatricopeptide (PPR) repeat-containing
            protein contains Pfam profile PF01535: PPR repeat
          Length = 939

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 20/57 (35%), Positives = 30/57 (52%)
 Frame = +1

Query: 361  TNSVVEADDLPKTEVQVMWKAPPAGSGCVLLKAMVYXNSSRWFAEDGQLTNESARTR 531
            T+  VE  +L  TE+  +    P+  GC ++ + VY ++ RW  ED  L  E  RTR
Sbjct: 876  THGNVEIAELAATELAAI---DPSHGGCKVMLSNVYADAGRW--EDVALVREEMRTR 927


>At4g00460.1 68417.m00063 expressed protein contains Pfam profile
           PF03759: Domain of unknown function (DUF315)
          Length = 473

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
 Frame = +1

Query: 241 TVCGLKIILDPLNPDTRRAPSKQGQFQL-FADTLTKFDEECTN----SVVEA-DDLPKTE 402
           TV G  + L+PL  + R    ++    L   D + +F   C N    + VE  +  P+ +
Sbjct: 144 TVFGQNLRLEPLETEKRALWKREMNCLLSVCDYIVEFIPRCQNLSNGATVEVMESRPRAD 203

Query: 403 VQVMWKAPPAGSGCVLLKAMVYXNSSRWFAEDGQLTNESART 528
           + +   A       ++     + N+  W+AE+G L+ +SAR+
Sbjct: 204 IYINLPALRKLDSMLMEALDSFQNTEFWYAEEGSLSMKSARS 245


>At5g51490.1 68418.m06386 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 536

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -2

Query: 410 TWTSVLGRSSASTTEFVHSSSNLVKVSAKSWNCPCLLGALLVSGFKGS 267
           T T   G S  + T+F+    +  K+S    NC  + GALL +G KG+
Sbjct: 148 TETCRRGSSDLNVTDFITPIVSNTKISHLISNCLAVNGALLTAGNKGN 195


>At2g26920.1 68415.m03229 ubiquitin-associated (UBA)/TS-N
           domain-containing protein contains Pfam profile PF00627:
           UBA/TS-N domain
          Length = 646

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +1

Query: 481 RWFAEDGQLTNESARTRLCPSPTAAPATTLNIGWCSRGSDXRRHIQRXSRP 633
           RW    GQ+ + S      PSP+  PA  +   + + G++ +   Q+  +P
Sbjct: 354 RWPPTTGQVPSASYSLPSSPSPSPQPAVRVEARYLASGNEFKNFQQQQQQP 404


>At4g15320.1 68417.m02344 cellulose synthase family protein similar
           to Zea mays cellulose synthase-5 [gi:9622882], -2
           [gi:9622876], -1 [gi:9622874]
          Length = 828

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 20/75 (26%), Positives = 31/75 (41%)
 Frame = +1

Query: 301 SKQGQFQLFADTLTKFDEECTNSVVEADDLPKTEVQVMWKAPPAGSGCVLLKAMVYXNSS 480
           SK      F      F +  TN +V      K  V  +      GSGC   + ++Y  SS
Sbjct: 405 SKNSNHCAFVQFPQNFYDSYTNELVVLQHYMKRGVAGIQGPIYIGSGCFHTRRVMYGLSS 464

Query: 481 RWFAEDGQLTNESAR 525
               +DG L++ ++R
Sbjct: 465 DDLEDDGSLSSVASR 479


>At1g27020.1 68414.m03294 expressed protein
          Length = 308

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 331 DTLTKFDEECTNSVVEADDLPKTEVQVMWKAPP 429
           D+L  F  +    V    D PK +VQV+W +PP
Sbjct: 71  DSLASFFMDYGYKVGGRLDFPKKKVQVLWLSPP 103


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,152,677
Number of Sequences: 28952
Number of extensions: 332763
Number of successful extensions: 805
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)