Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0907
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       28   1.6  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   8.5  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    25   8.5  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    25   8.5  

>SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 104

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -2

Query: 222 FRANNGTSTGTTEKNGMWKP--FVYCFHIRLCLC 127
           + +++ T+    E+   W+   F+ C HIR C+C
Sbjct: 29  YDSDSPTTVHHDERKESWRSHGFIVCLHIRCCIC 62


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 209 LLARNGSSLRDTAHCYERSLRIGRY 283
           L  RNG++LRD AH Y R+L    Y
Sbjct: 758 LWIRNGTTLRDQAHHY-RNLSFHEY 781


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 241 HCTLLRTVITYWPVLTNQTTKAALFAT*NEWSS-TRSSLLD 360
           H +L    ITYWP +      +ALF   N  +   + SLLD
Sbjct: 417 HKSLKEWEITYWPKIDVSIFSSALFGIRNALAQLLKKSLLD 457


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +3

Query: 267 YVLAGTNKSDDQSGIIRYVKRMVIHPLFSVGPY---WLDVEDFNLKQVAARWD 416
           ++  G   SD        V R ++ PLFS+G +   W  V + ++  V A++D
Sbjct: 347 FIFLGPKASDVYESYSALVGRPLLPPLFSIGYHQCRWNYVSEEDVLNVDAKFD 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,086,259
Number of Sequences: 5004
Number of extensions: 64024
Number of successful extensions: 156
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)