Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0907
(736 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0580 - 7539208-7539328,7539409-7539579,7539658-7540024,754... 30 1.7
03_05_0896 - 28592658-28593331,28594069-28595455 30 1.7
10_01_0167 + 1876793-1877402,1877423-1877642,1877760-1879534,188... 29 2.9
06_01_0116 - 907995-908813,909002-909286 29 2.9
12_02_0723 - 22532379-22532902,22533060-22533135,22533195-225333... 29 3.8
12_02_0722 - 22521909-22521932,22522291-22522419,22522976-225242... 29 3.8
12_02_0534 - 20103908-20105897,20106314-20107116 29 3.8
09_04_0324 - 16686872-16687074,16687479-16687521,16687735-166880... 29 3.8
12_02_0720 - 22510996-22512949,22513752-22514533 29 5.1
09_02_0525 - 10217332-10217498,10217537-10217750 29 5.1
01_06_0997 + 33676441-33676758,33678223-33678314,33678443-336785... 29 5.1
11_01_0445 - 3455449-3456096,3456348-3457958 28 6.7
02_02_0270 + 8431503-8431830,8431961-8432149,8434288-8434412,843... 28 6.7
05_07_0081 - 27572047-27572925,27573285-27573419 28 8.8
>04_01_0580 -
7539208-7539328,7539409-7539579,7539658-7540024,
7540093-7540516
Length = 360
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 130 KTQSDVKAVHERFPHAVLFGGTCGGSIISPKWI-LTAGH 243
+T++D KA+HE P GG S+++PK + L GH
Sbjct: 125 RTEADSKAIHEPPPMKKRRGGKVNASLLAPKKLDLDKGH 163
>03_05_0896 - 28592658-28593331,28594069-28595455
Length = 686
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = +1
Query: 73 ANDIPDLKQKSALVTTEFTKTQSDVKAVHERFPHAVLFG-GTCGGSI 210
+ +IPDLKQ F + + A P + G G CGG +
Sbjct: 182 SGEIPDLKQPLQQFNVSFNQLNGSIPATLRTMPRSAFLGTGLCGGPL 228
>10_01_0167 +
1876793-1877402,1877423-1877642,1877760-1879534,
1880019-1880199,1881313-1881529
Length = 1000
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -2
Query: 657 PLAQIISRELYCSNLEHTSSDCVDSSMACISLRITPPCSSVP 532
PL++I SR L+C + T D + +S I C +P
Sbjct: 332 PLSEIHSRRLFCQRIFSTDEDGCPDILQEVSTDILKKCGGIP 373
>06_01_0116 - 907995-908813,909002-909286
Length = 367
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -1
Query: 733 HQPPFAVHEPAATITIASRVEPWGATFSADHIQRV 629
HQPP PAA + V P AT S +Q+V
Sbjct: 62 HQPPVLAANPAADVAAGEAVPPATATASRRFLQKV 96
>12_02_0723 -
22532379-22532902,22533060-22533135,22533195-22533380,
22533459-22534323,22534740-22534918,22535168-22535542
Length = 734
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = -2
Query: 660 RPLAQIISRELYCSNLEHTSSDCVDSSMACISLRITPPCSSVP 532
+PL+ SR+L+C + ++ DC + + ++ +I C VP
Sbjct: 236 KPLSDDDSRQLFCKRIFDSNDDC-PADLCGVTEKILKKCGGVP 277
>12_02_0722 -
22521909-22521932,22522291-22522419,22522976-22524242,
22524659-22525461
Length = 740
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = -2
Query: 660 RPLAQIISRELYCSNLEHTSSDCVDSSMACISLRITPPCSSVP 532
+PL+ SR+L+C + ++ DC + + ++ +I C VP
Sbjct: 319 KPLSDDDSRQLFCKRIFDSNDDC-PADLCGVTEKILKKCGGVP 360
>12_02_0534 - 20103908-20105897,20106314-20107116
Length = 930
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = -2
Query: 660 RPLAQIISRELYCSNLEHTSSDCVDSSMACISLRITPPCSSVP 532
+PL+ SR+L+C + ++ DC + + ++ +I C VP
Sbjct: 319 KPLSDDDSRQLFCKRIFDSNDDC-PADLCGVTEKILKKCGGVP 360
>09_04_0324 -
16686872-16687074,16687479-16687521,16687735-16688068,
16688190-16688854
Length = 414
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +2
Query: 545 HGGVMRKDMHAMELSTQSDEVCSKLEQYNSLDMICAKG 658
H GV+ + MEL ++D ++L +++S +CA+G
Sbjct: 188 HEGVVARSYSVMELVLEADSNKAQLWEFSSASGVCAEG 225
>12_02_0720 - 22510996-22512949,22513752-22514533
Length = 911
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -2
Query: 660 RPLAQIISRELYCSNLEHTSSDCVDSSMACISLRITPPCSSVP 532
+PL+ SR+L+C + ++ DC + ++ +I C VP
Sbjct: 312 KPLSNDDSRQLFCKRIFDSNDDC-PGDLCGVTEKILKKCGGVP 353
>09_02_0525 - 10217332-10217498,10217537-10217750
Length = 126
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 203 VPLLARNGSSLRDTAHCYERSLRIGR 280
VPLLAR G ++R+T R R GR
Sbjct: 97 VPLLARGGDTMRETVEAMLRRARRGR 122
>01_06_0997 +
33676441-33676758,33678223-33678314,33678443-33678540,
33678824-33678979,33679106-33679731,33679826-33679896,
33679987-33680241,33680337-33680454,33680595-33680766,
33680854-33681395
Length = 815
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +1
Query: 100 KSALVTTEFTKTQSDVKAVHERFPHAVLFGGTCGGSIISP 219
KSA+VTT TK + D + E P V GG I+P
Sbjct: 629 KSAIVTTASTKDEYDTPILAEALPRKVADPFDYGGGNINP 668
>11_01_0445 - 3455449-3456096,3456348-3457958
Length = 752
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 512 RPDW*IWLIIECCNFYRFAVHG 447
RP W W I++ + YRF HG
Sbjct: 140 RPLWSFWAILQLKSMYRFFAHG 161
>02_02_0270 +
8431503-8431830,8431961-8432149,8434288-8434412,
8434527-8434703,8434798-8434871,8434978-8435713
Length = 542
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +2
Query: 527 GYGTDEHGGVMRKDMHAMELSTQSDEVCSKLEQYNSLDMICAKGRP 664
G+G D GGV+ K H++ S + +L+ + AK P
Sbjct: 256 GFGVDPTGGVLTKGTHSLTSSPDNAPTSGRLKPMRFMSKSKAKAAP 301
>05_07_0081 - 27572047-27572925,27573285-27573419
Length = 337
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -1
Query: 112 PAQIFVLNPVCHWRRVEVARTHLPPARSPREPTVCW 5
P+ +F + + +RRV + +LPP + P+ CW
Sbjct: 224 PSFLFAASLLPTYRRVSSSGFYLPPPPNNHHPSPCW 259
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,929,071
Number of Sequences: 37544
Number of extensions: 479733
Number of successful extensions: 1248
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1248
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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