Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0907
         (736 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g27210.1 68414.m03314 expressed protein                             33   0.26 
At5g48380.1 68418.m05978 leucine-rich repeat family protein / pr...    28   5.6  
At5g62660.1 68418.m07864 F-box family protein contains Pfam prof...    28   7.4  
At3g54400.1 68416.m06015 aspartyl protease family protein contai...    28   7.4  
At4g13660.1 68417.m02124 pinoresinol-lariciresinol reductase, pu...    27   9.8  
At3g03950.2 68416.m00414 expressed protein contains Pfam profile...    27   9.8  
At3g03950.1 68416.m00413 expressed protein contains Pfam profile...    27   9.8  

>At1g27210.1 68414.m03314 expressed protein
          Length = 625

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +2

Query: 632 SLDMICAKGRPPRFDSACNGDSCSXL 709
           S D+  + GR PR  S C GDSCS L
Sbjct: 524 SCDLAVSNGRVPRNSSGCAGDSCSKL 549


>At5g48380.1 68418.m05978 leucine-rich repeat family protein /
           protein kinase family protein contains protein kinase
           domain, Pfam:PF00069; contains leucine-rich repeats,
           Pfam:PF00560
          Length = 620

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 616 IRAIQLSGYDLR*RSPPTVRLC 681
           + +I+LSGY LR   PP V+LC
Sbjct: 78  VLSIKLSGYGLRGVFPPAVKLC 99


>At5g62660.1 68418.m07864 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 379

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 103 IFVLNPVCHWRRVEVARTHLP 41
           +FVL P   W+R+E  + HLP
Sbjct: 221 VFVLEPGGSWKRIEFDQPHLP 241


>At3g54400.1 68416.m06015 aspartyl protease family protein contains
           Pfam profile: PF00026 eukaryotic aspartyl protease
          Length = 425

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -3

Query: 284 STGQYVMTVRNSVQCPAVRIHF-GL-IMEPPQVPPKRTACGNLSCTAFTSDCVFVNSVV 114
           S G +      SV  P+V   F G+ +  PP      ++ GNLSC A  +  V VNSV+
Sbjct: 337 SLGGFDTCYSGSVVFPSVTFMFAGMNVTLPPDNLLIHSSAGNLSCLAMAAAPVNVNSVL 395


>At4g13660.1 68417.m02124 pinoresinol-lariciresinol reductase,
           putative similar to pinoresinol-lariciresinol reductase
           TH1 [Tsuga heterophylla][GI:7578915]; contains
           isoflavone reductase domain PF02716
          Length = 317

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 583 LHGVHIFTHHAPMLVSSVASISDVDPIGRF 494
           + GVH  TH+ P+ +  VA+I +   + RF
Sbjct: 89  MSGVHFRTHNIPVQLKLVAAIKEAGNVKRF 118


>At3g03950.2 68416.m00414 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 424

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
 Frame = +2

Query: 518 GYAGYGTDEHGGVMRKDMHAMELSTQSDEVCSKLEQYNSLDMICAKGRPPRF--DSACNG 691
           G+A YG   HG   R +M+A  L    D + S    Y   +        PRF  D   N 
Sbjct: 45  GHAPYGASSHGSERRPNMNAGNLLNGGDSIGSYPWGYIPANYPSGGYPDPRFGYDRNSNH 104

Query: 692 DSCSXLVD 715
            S S L++
Sbjct: 105 SSFSHLMN 112


>At3g03950.1 68416.m00413 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 425

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
 Frame = +2

Query: 518 GYAGYGTDEHGGVMRKDMHAMELSTQSDEVCSKLEQYNSLDMICAKGRPPRF--DSACNG 691
           G+A YG   HG   R +M+A  L    D + S    Y   +        PRF  D   N 
Sbjct: 46  GHAPYGASSHGSERRPNMNAGNLLNGGDSIGSYPWGYIPANYPSGGYPDPRFGYDRNSNH 105

Query: 692 DSCSXLVD 715
            S S L++
Sbjct: 106 SSFSHLMN 113


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,800,009
Number of Sequences: 28952
Number of extensions: 356774
Number of successful extensions: 829
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)