Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0905
         (776 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0985 + 25052753-25053691                                         29   4.1  
04_01_0123 - 1283197-1283292,1283330-1284439,1284790-1285177,128...    29   5.4  
11_01_0348 - 2607315-2607424,2608634-2609030                           28   7.2  
01_05_0116 - 18294960-18295078,18295967-18296102,18297167-182972...    28   9.5  

>12_02_0985 + 25052753-25053691
          Length = 312

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +3

Query: 417 LAARITPQNACLEVGVPLGGWSSGVAC 497
           LA R  P   CL V  P GGW     C
Sbjct: 258 LAWRCAPNATCLNVQTPTGGWGHQCKC 284


>04_01_0123 -
           1283197-1283292,1283330-1284439,1284790-1285177,
           1285523-1287609
          Length = 1226

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = -2

Query: 499 QHATPDDQPPRGTPTSKHAFCGVIRAARVIFNGLIVVSRLLIKHICFFSGGQL 341
           ++  P  +P   +  +K A+C + +  R      +V  + L KHI F  G  L
Sbjct: 646 EYVNPPKRPDPQSSDTKKAWCPIHKTDRHSLEDCLVFKKSLEKHIAFEKGNTL 698


>11_01_0348 - 2607315-2607424,2608634-2609030
          Length = 168

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 354 EKKQMCLIKRRETTISPLNMTLAARITPQNACLE 455
           E   +C I  +  TI P ++ LA RI   + CLE
Sbjct: 106 EDTNLCAIHAKRVTIMPKDIQLARRIRGLHPCLE 139


>01_05_0116 -
           18294960-18295078,18295967-18296102,18297167-18297275,
           18298027-18298070,18298305-18298372,18298625-18298695,
           18299068-18300005
          Length = 494

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = -2

Query: 523 SQLVPQFGQHATPDDQPPRG 464
           S L+P+F Q+ +PDD PPRG
Sbjct: 19  SPLLPRFTQYNSPDD-PPRG 37


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,885,981
Number of Sequences: 37544
Number of extensions: 388366
Number of successful extensions: 1004
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)