Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0905
         (776 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31092| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1)                 29   5.5  
SB_42426| Best HMM Match : IBB (HMM E-Value=1.9)                       29   5.5  
SB_54579| Best HMM Match : RVT_1 (HMM E-Value=2.7e-20)                 28   7.3  
SB_40248| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.7  

>SB_31092| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1032

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 250 CSALNVQCCVIFTWNKQCEPWPLGIRWVDQTTVHRRK 360
           C+ +N+   +   +++   PWPL    V Q T H+R+
Sbjct: 869 CTYMNMSAELASVFSRSVAPWPLSSTSVPQATSHKRR 905


>SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1)
          Length = 667

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 8/27 (29%), Positives = 20/27 (74%)
 Frame = +3

Query: 651 APYNVELKRLADTLSALRLLWVVLRYF 731
           A +N+ L+ +   ++ALR++W++ R++
Sbjct: 453 ASFNIVLETIPSMMNALRMVWIISRHY 479


>SB_42426| Best HMM Match : IBB (HMM E-Value=1.9)
          Length = 458

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 17  VLVIEVPITNFASVILPNTRCVTVGTVH 100
           VL  ++P++N    ++  TRC T G +H
Sbjct: 391 VLFYKIPLSNLFCAVMAKTRCRTPGFIH 418


>SB_54579| Best HMM Match : RVT_1 (HMM E-Value=2.7e-20)
          Length = 308

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +1

Query: 292 NKQCEPWPLGIRWVDQTTVHRRKSKCA 372
           N+  + WP  +++VD TT++    +C+
Sbjct: 171 NRLVDNWPYRVKYVDDTTIYEAVPRCS 197


>SB_40248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 318 GNKVGGSDNCPPEKKQMCLIKRRETTIS 401
           G K GGS NCPP K   C    R  ++S
Sbjct: 10  GKKPGGSGNCPP-KFNDCYWSNRSVSVS 36


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,674,548
Number of Sequences: 59808
Number of extensions: 445261
Number of successful extensions: 1084
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)