Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0905
         (776 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28971-9|AAK68669.1|   90|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z74033-3|CAA98477.1|  407|Caenorhabditis elegans Hypothetical pr...    29   4.9  
Z49068-2|CAA88855.1|  389|Caenorhabditis elegans Hypothetical pr...    28   8.6  

>U28971-9|AAK68669.1|   90|Caenorhabditis elegans Hypothetical
           protein B0244.11 protein.
          Length = 90

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = -2

Query: 454 SKHAFCGVIRAARVIFNGLI---VVSRLLIKHICFFSGGQLSDPPTLFPEATAHT 299
           + H F  ++ A+R  F  L+   V+S  L + +CF SG   S  P   P   +HT
Sbjct: 7   ANHCFLSLLLASRFHFKPLLRNRVLSLPLFQFVCFISGSSSSSFPYSQPVFISHT 61


>Z74033-3|CAA98477.1|  407|Caenorhabditis elegans Hypothetical
           protein F38B7.3 protein.
          Length = 407

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 520 QLVPQFGQHATPDDQPPRGTPTSKH 446
           Q+ P +GQ+  P    P G PTS H
Sbjct: 194 QVPPAYGQYPQPGYPQPAGVPTSSH 218


>Z49068-2|CAA88855.1|  389|Caenorhabditis elegans Hypothetical
           protein K01C8.2 protein.
          Length = 389

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 404 IKYDSCSANYPTKCVLGSRC 463
           I Y  CS N PT C+ G +C
Sbjct: 91  IGYVECSQNNPTNCITGYQC 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,583,535
Number of Sequences: 27780
Number of extensions: 325216
Number of successful extensions: 765
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)