Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0905
         (776 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31620.1 68417.m04492 transcriptional factor B3 family protei...    32   0.37 
At4g31615.1 68417.m04491 transcriptional factor B3 family protei...    31   0.64 
At3g26140.1 68416.m03261 glycosyl hydrolase family 5 protein / c...    28   6.0  

>At4g31620.1 68417.m04492 transcriptional factor B3 family protein
           low similarity to reproductive meristem gene 1 from
           [Brassica oleracea var. botrytis] GI:3170424,
           [Arabidopsis thaliana] GI:13604227; contains Pfam
           profile PF02362: B3 DNA binding domain
          Length = 492

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 232 TEEFSECSALNVQCCVIFTWNKQCEPWPLGIR 327
           T+ FS  + L  +CC+I   N   E W LG+R
Sbjct: 172 TKHFSRANGLTKRCCMIDLMNLSGESWTLGLR 203


>At4g31615.1 68417.m04491 transcriptional factor B3 family protein
           low similarity to reproductive meristem gene 1 from
           [Brassica oleracea var. botrytis] GI:3170424,
           [Arabidopsis thaliana] GI:13604227; contains Pfam
           profile PF02362: B3 DNA binding domain
          Length = 478

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 241 FSECSALNVQCCVIFTWNKQCEPWPLGIRW 330
           F+  + LN +CC I   NK  + W LG+R+
Sbjct: 172 FARSNGLNERCCEIDLMNKHGKSWTLGLRY 201


>At3g26140.1 68416.m03261 glycosyl hydrolase family 5 protein /
           cellulase family protein contains Pfam profile: PF00150
           cellulase (glycosyl hydrolase family 5)
          Length = 508

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 393 TISPLNMTLAARITPQNACLEVGVPLGGWSSGVACCPN*GTNCE 524
           TIS  NM LAA+ T  + CL+V       +S   C     ++C+
Sbjct: 452 TISASNMLLAAKSTNNSLCLDVDETNNLMASNCKCVKGEDSSCD 495


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,455,692
Number of Sequences: 28952
Number of extensions: 293795
Number of successful extensions: 713
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)