Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0903
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    36   0.008
SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S...    27   3.0  
SPAC630.11 |vps55||vacuolar sorting protein Vps55 |Schizosacchar...    27   3.0  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    27   3.9  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    26   6.8  
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         25   9.0  
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac...    25   9.0  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    25   9.0  

>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 35.5 bits (78), Expect = 0.008
 Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
 Frame = +3

Query: 510 GFSSGYTSPAVLTMNITLD--ITKEEITWVGGLMPLAALVGGIVGGPLIEYLGRXKTIMG 683
           G+ +G  S A+  +   L   ++  +   +      AAL+     G L +++GR + ++ 
Sbjct: 96  GYDTGVISGALAVLGSDLGHVLSSGQKELITSATSFAALISATTSGWLADWVGRKRLLLC 155

Query: 684 TAVPFTIGWMLIANAINVVMVFAGR 758
               F IG +++A + NV M+  GR
Sbjct: 156 ADAIFVIGSVIMAASRNVAMMVVGR 180


>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 265 HFQQLRQISLGNEFKYKMEMEIKDENLRNSVPFVRQ 372
           H  QLR+  L N F+ K+E  I   + +  +PF+ Q
Sbjct: 54  HGPQLREYQLKNAFRPKLEGVISSLDNKLPIPFMNQ 89


>SPAC630.11 |vps55||vacuolar sorting protein Vps55
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 122

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -3

Query: 283 DVVVESDDEFLERILFVFAATLC-GYVFRYRIVVSGHQSTLGST*SCEGSA 134
           D + E D   L+   F F AT+C G+      V  G   T  +T SC G +
Sbjct: 52  DFLQEEDRNLLDFGRFTFGATICTGFALPIVFVNVGLIGTAAATMSCVGGS 102


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +2

Query: 542 ANNEYNF-GHNKGRNNMGWGSYAVSSFGRRHCWRTFDRIPRKXKDNYGYS 688
           AN+ Y F G   GR      S +V+S+GR+   +T D + ++ +   GYS
Sbjct: 683 ANSVYGFTGATNGRLPCLAISSSVTSYGRQMIEKTKDVVEKRYRIENGYS 732


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 337 ENLRNSVPFVRQLSTDSVKTKTEYDNEDGTP 429
           E + +++P++  L   + K  +EYDNE   P
Sbjct: 224 EYVNDAIPYILSLYRQNRKISSEYDNEAFPP 254


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 7/22 (31%), Positives = 17/22 (77%)
 Frame = +1

Query: 97  GAFETNALSVNNQHFPRNFMWI 162
           G ++ +++S++N  FP +FM++
Sbjct: 17  GVYKISSISLSNSFFPHSFMFV 38


>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
           Ura3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +3

Query: 534 PAVLTMNITLDITKEEITWVGGLMPLAALVGGIVGGPLIEYLGRXKTIMGTA 689
           P VL + I  D+ +EE+T +  ++    + G IVG   ++   R KT+  T+
Sbjct: 301 PPVL-VKIAPDLNEEELTDIADVLKKCKIDGVIVGNTTVQ---RPKTLKSTS 348


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -3

Query: 556 IFIVSTAGDVYPDENPHSLNRQKLQTLQEAA 464
           IF  +   +V P EN HS      Q L EAA
Sbjct: 549 IFHATCLQEVRPSENKHSNTNTSTQNLAEAA 579


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,142,989
Number of Sequences: 5004
Number of extensions: 62789
Number of successful extensions: 174
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)