Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0903
         (768 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0)                    68   1e-11
SB_2499| Best HMM Match : Sugar_tr (HMM E-Value=1e-28)                 66   4e-11
SB_43326| Best HMM Match : TPR_2 (HMM E-Value=0.045)                   34   0.11 
SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.59 
SB_47404| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_34423| Best HMM Match : 7tm_2 (HMM E-Value=6e-07)                   29   3.1  
SB_11112| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_39971| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_8709| Best HMM Match : Sugar_tr (HMM E-Value=0)                     29   5.5  
SB_37980| Best HMM Match : 7tm_2 (HMM E-Value=5.3e-13)                 28   7.2  
SB_59212| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_15458| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_311| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   9.5  

>SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0)
          Length = 512

 Score = 67.7 bits (158), Expect = 1e-11
 Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
 Frame = +3

Query: 510 GFSSGYTSPA----VLTMNITLDITKEEITWVGGLMPLAALVGGIVGGPLIEYLGRXKTI 677
           GF  GY+S A    +     ++ +T  + +W   L+ L A++G  +GG  +EY GR  TI
Sbjct: 59  GFCLGYSSSALEDLIAESKESVKLTVSQGSWFSSLVTLGAILGAPLGGWTLEYFGRKGTI 118

Query: 678 MGTAVPFTIGWMLIANAINVVMVFAGR 758
           M  AVPF +GWMLIA A +  M++ GR
Sbjct: 119 MACAVPFEVGWMLIAYANSHYMLYIGR 145


>SB_2499| Best HMM Match : Sugar_tr (HMM E-Value=1e-28)
          Length = 456

 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 35/87 (40%), Positives = 52/87 (59%), Gaps = 4/87 (4%)
 Frame = +3

Query: 510 GFSSGYTSPAVLTM---NIT-LDITKEEITWVGGLMPLAALVGGIVGGPLIEYLGRXKTI 677
           G+  GY+S A   +   N T L +  +EITW G L+ + A++GG + G LI+ +GR   +
Sbjct: 55  GYCMGYSSAATTQLENKNATDLYLNADEITWFGSLLNIGAMLGGPIQGFLIDLIGRKFAL 114

Query: 678 MGTAVPFTIGWMLIANAINVVMVFAGR 758
           + T+VPF  GW+LI    N  M+ AGR
Sbjct: 115 ILTSVPFCSGWLLIGFGKNAAMLNAGR 141


>SB_43326| Best HMM Match : TPR_2 (HMM E-Value=0.045)
          Length = 261

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 21/64 (32%), Positives = 34/64 (53%)
 Frame = +1

Query: 319 EMEIKDENLRNSVPFVRQLSTDSVKTKTEYDNEDGTPYKSTTQKLFLWTQLLAAFAVSVG 498
           EMEI+ EN   ++  +R+ +T    TKT Y +E  T  K   + L LW+ + A    S+G
Sbjct: 134 EMEIRHENYSKALELIRK-ATAVPSTKTNYYDESETVQKRVHKSLKLWS-MYADLEESLG 191

Query: 499 SMNA 510
           +  +
Sbjct: 192 TFQS 195


>SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1530

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
 Frame = +3

Query: 441  NSETVSMDAASCSV---CSFCRFNECGFSSGYTSPAVLTMNITLDITKEEITWVGGLMPL 611
            NS   + D+ S S+   C +     C FS+  T    + + I+ D +++ I  + G  P+
Sbjct: 855  NSHFTTFDSRSYSMHGQCDYVLSEHCHFSNDTTKQFTIHIKISSDGSRQLIVSLAGATPV 914

Query: 612  AALVGGIVGGPLI 650
               +GG+ G P +
Sbjct: 915  T--LGGVEGSPTV 925


>SB_47404| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +3

Query: 417 GWNTVQIYNSETVSMDAASCSVCSFCRFNECGFSSGYTSPAVLTMNIT 560
           G+NTVQ +++ T ++  +S S C       C    G  + A +T+NIT
Sbjct: 31  GFNTVQFFDNYTQTIVTSSFSDCDILDKTICMTVYGVYNDAEVTINIT 78


>SB_34423| Best HMM Match : 7tm_2 (HMM E-Value=6e-07)
          Length = 656

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 513 FSSGYTSPAVLTMNITLDITKEEITWVGGL 602
           FS   T PAV  MN+ + I   +ITW+ G+
Sbjct: 155 FSELRTIPAVNLMNLAVSILMAQITWLAGV 184


>SB_11112| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 464

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -3

Query: 640 PPTMPPTKAANGIRPPTHVISSFVMSKVIFIVSTAGDVYPDENPHSLNRQKLQT 479
           PPT P T  A G  P   +I +   S    +   A +  PDE     +R + +T
Sbjct: 22  PPTDPATDPATGAPPTDSMIEATDESGTTVVPEEATEEDPDEQDQDFSRVQSET 75


>SB_39971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 589 HVISSFVMSKVIFIVSTAGDVYPDENP-HSLNRQKLQTLQE 470
           HV+ S + S   ++V TAG + P E P  S+N + L  +++
Sbjct: 345 HVVKSLIKSTYGYVVFTAGAILPVEGPLKSVNAECLLMVEQ 385


>SB_8709| Best HMM Match : Sugar_tr (HMM E-Value=0)
          Length = 493

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
 Frame = +3

Query: 510 GFSSGYTSPAVLTMNITLDITK--EEITWVGGLMPLAALVGGIVGGPLIEYLGRXKTIMG 683
           G+ +G  S A++ ++    ++    E+  V G +   A+VG ++GG L + LGR   ++ 
Sbjct: 65  GYDTGVVSGAMILISEVFHLSDFWHELI-VSGTIG-TAIVGAVLGGILNDSLGRKPVLVL 122

Query: 684 TAVPFTIGWMLIANAINVVMVFAGRV 761
            +  FT G +++  A    ++  GR+
Sbjct: 123 CSGVFTAGAVVMGVAGTKHVLLVGRL 148



 Score = 28.7 bits (61), Expect = 5.5
 Identities = 18/79 (22%), Positives = 35/79 (44%)
 Frame = +3

Query: 507 CGFSSGYTSPAVLTMNITLDITKEEITWVGGLMPLAALVGGIVGGPLIEYLGRXKTIMGT 686
           CG ++     A + +   +  +K  I W+   +     +  IVG  L+E +GR K ++G+
Sbjct: 306 CGINTVMYYSATIILMSGIGNSKTSI-WLAAAIAFGNTLFTIVGIFLVERIGRRKLLLGS 364

Query: 687 AVPFTIGWMLIANAINVVM 743
                +   L+  A  + M
Sbjct: 365 LAGVILSLFLLGGAFYLAM 383


>SB_37980| Best HMM Match : 7tm_2 (HMM E-Value=5.3e-13)
          Length = 1297

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 528 TSPAVLTMNITLDITKEEITWVGGL 602
           T+P V  MN+ L I   ++TW+ G+
Sbjct: 775 TTPGVNLMNLALSILLAQVTWLAGI 799


>SB_59212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -2

Query: 80 HECGITALHPLVRDGFVRFHPG 15
          +E G+ AL PLV D FVRF  G
Sbjct: 29 NESGLYALGPLVGDNFVRFGMG 50


>SB_15458| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 662

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 280 RQISLGNEFKYKMEMEIKDENLR 348
           RQ+ LG E   K+++++K+EN R
Sbjct: 95  RQVELGEEVLQKVQLKLKEENAR 117


>SB_311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 66

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 528 TSPAVLTMNITLDITKEEITWVGGL 602
           T PAV  MN+ + I   +ITW+ G+
Sbjct: 5   TIPAVNLMNLAVSILMAQITWLAGV 29


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,342,207
Number of Sequences: 59808
Number of extensions: 505399
Number of successful extensions: 2109
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2106
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)