Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0900
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    27   3.5  
SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr ...    26   4.7  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.2  
SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom...    25   8.2  

>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 663 FEYAICVLSASFLTFSIT*KLT 598
           F    C++S SFLTF++  KLT
Sbjct: 488 FMLGTCIVSVSFLTFTVYAKLT 509


>SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 364

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 600 LTFTLSRTLKNSH*ARRLRIQIWRVIASTKIW 695
           +T +LS+ +K    A R ++ +W   ++TKIW
Sbjct: 248 VTRSLSKNIKGDGDAVRAQLWLWNRQSNTKIW 279


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 624 LKNSH*ARRLRIQIWRVIASTKIWGYHSIH 713
           L N H  + LR+ + ++IA  +IW Y + H
Sbjct: 30  LLNLHNEQNLRLVVAQLIACGRIWDYWNEH 59


>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -1

Query: 89  LVNVLASEPTQRTTK-AKIINFCISIVSF 6
           L N L++   +  TK AK++NFCI I  F
Sbjct: 63  LFNSLSARTFRNLTKCAKVVNFCILISLF 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,614,279
Number of Sequences: 5004
Number of extensions: 48127
Number of successful extensions: 125
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)