Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0900
         (716 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0442 - 3369827-3370168,3370608-3372616,3372953-3373277,337...    29   3.7  
12_01_0268 - 1941515-1941534,1941868-1942057,1942155-1942322,194...    28   6.4  

>11_01_0442 -
           3369827-3370168,3370608-3372616,3372953-3373277,
           3373386-3373415
          Length = 901

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
 Frame = +3

Query: 210 RLEGLRIVPDQRPVLCSKGASPGKDCNVKCSDLLTDDITKAAKCAKKIYKRHRFDAWY-- 383
           R EG    P ++P+    GASP    + K    +TD+ T+    AK + ++   +     
Sbjct: 2   REEGGIASPGEKPI--PNGASPNHSQSPKICSRITDNETQGTATAKSLNEKLVLETVSDD 59

Query: 384 GWKNHCQGSLPDI 422
               HCQ   PD+
Sbjct: 60  SSTQHCQSPQPDV 72


>12_01_0268 -
           1941515-1941534,1941868-1942057,1942155-1942322,
           1943425-1943568,1944284-1944443,1944512-1944621,
           1944900-1945019,1945649-1945766,1946610-1946729,
           1947228-1947285,1947590-1947723,1949332-1949414,
           1949544-1949786,1949851-1949976,1950075-1951562
          Length = 1093

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 608 YVIENVKKLALSTQIAYSNLARNR-FDKNLGLSFN 709
           YV++N K   L   + +++L  NR FD+ L +S N
Sbjct: 675 YVLDNCKLSFLLVMLVFASLVGNRYFDRELAMSIN 709


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,811,076
Number of Sequences: 37544
Number of extensions: 316481
Number of successful extensions: 758
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)