Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0898
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual      46   7e-06
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    32   0.093
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||...    30   0.38 
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    28   2.0  
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...    26   6.1  
SPAC56F8.11 |spc3||signal peptidase subunit Spc3 |Schizosaccharo...    26   6.1  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    26   8.1  
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    26   8.1  

>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 272

 Score = 46.0 bits (104), Expect = 7e-06
 Identities = 21/71 (29%), Positives = 42/71 (59%)
 Frame = +2

Query: 509 KYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNT 688
           KY + I+    E++EK S+I++N+ + I++ GN+ G +RK H+     F+    + +  +
Sbjct: 79  KYHVNIIYGFPEKEEKQSNIIYNSCIYITENGNLGGVYRKVHL-----FDTERKHFKKGS 133

Query: 689 GHPVFATRYGQ 721
             P+F T +G+
Sbjct: 134 DFPIFETSFGK 144


>SPBC336.05c |||S-adenosylmethionine-
           dependentmethyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 378

 Score = 32.3 bits (70), Expect = 0.093
 Identities = 21/64 (32%), Positives = 31/64 (48%)
 Frame = -2

Query: 490 KVVVGPSSADSANSHHGCFSLVQNAKGMFHNSWKQMMLTPSWPATSMIFLTLLKIAFFCS 311
           ++ V   S ++A SH  CF   QN+  + +       +   +P T   F+ LLK AFF  
Sbjct: 232 QIAVFHQSKNNAASH--CFLKDQNSSILLYKKITYPFMEQLFPPTVQQFMNLLKKAFFDH 289

Query: 310 LTGR 299
           L GR
Sbjct: 290 LFGR 293


>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 322

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
 Frame = +2

Query: 551 EKHSDILWNTAVVISDTGNVIGKHRKNH-----IPRVGDFNESNYYMEGNTGHPVFATRY 715
           E+    L+NTA+V   +G +I  HRK H     IP    F ES+    G+    +  T Y
Sbjct: 129 ERKDGKLYNTAMVFDPSGKLIAVHRKIHLFDIDIPGGVSFRESDSLSPGD-AMTMVDTEY 187

Query: 716 GQ 721
           G+
Sbjct: 188 GK 189


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = +2

Query: 518  MVIVSSILERDEKHSDIL 571
            +++VS++LE DEKH D++
Sbjct: 998  LIVVSNLLEMDEKHVDVV 1015


>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -3

Query: 705 ANTGWPVLPSM**LDSLKSPTLGMWFLR-CFPITFPVSLITTAVFQSMSECFSSLSN 538
           A+ G P++  +  LD+      G W  +    +  PVSLIT AVF   + C SSL +
Sbjct: 247 ADDGKPLVEKI--LDAAGQKGTGKWTAQNALEMGTPVSLITEAVF---ARCLSSLKS 298


>SPAC56F8.11 |spc3||signal peptidase subunit Spc3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 185

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/61 (22%), Positives = 29/61 (47%)
 Frame = +2

Query: 500 TRHKYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYME 679
           T+H    ++ S   E+ EK+  ++W+  +   +   +  K   ++I +   FNE +   E
Sbjct: 87  TKHVVVYLVASYSTEKHEKNQVVVWDKILSSPEESKMFMKDTLSNI-QAHPFNEYSNQFE 145

Query: 680 G 682
           G
Sbjct: 146 G 146


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 82  NNLTGRDLEEFNRIHFGRRNNLEI 153
           NN+  R +EE N I  G+R  LE+
Sbjct: 8   NNILKRHIEEDNNIDNGKRKKLEL 31


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 52  ETHSLESII-NNNLTGRDLEEFNRIHFGRRNNLEIKLK 162
           E H +E +I + N+T  DL  F  + FG+ N   ++ K
Sbjct: 369 EFHQVEGVICDRNITLGDLIGFLEVFFGKMNVKNLRFK 406


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,707,544
Number of Sequences: 5004
Number of extensions: 79262
Number of successful extensions: 268
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)