Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0898
(875 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.30
SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0) 33 0.30
SB_11184| Best HMM Match : CN_hydrolase (HMM E-Value=4.4e-10) 32 0.53
SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18) 29 3.7
SB_47367| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_19326| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_16714| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.5
SB_33687| Best HMM Match : Filament (HMM E-Value=0.1) 28 8.6
SB_18557| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 33.1 bits (72), Expect = 0.30
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 161 KNPRSLQLRRLTSTSPHTLSRPRTSRPDPREC-EGRNSSAFHRGAHRSSSQRAKE 322
K PR R S+SP SRP+ + P PR E R S RG+ RS S +E
Sbjct: 1047 KRPRHQSRERRPSSSPPRRSRPQRTSPSPRRTPEDRRRS---RGSRRSPSPPKRE 1098
>SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0)
Length = 242
Score = 33.1 bits (72), Expect = 0.30
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +2
Query: 515 AMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHI 637
A ++ SI ER L+NT++ +GN++GKHRK H+
Sbjct: 80 AYIVGGSIPERASNRK--LYNTSLSYDPSGNLMGKHRKIHL 118
>SB_11184| Best HMM Match : CN_hydrolase (HMM E-Value=4.4e-10)
Length = 128
Score = 32.3 bits (70), Expect = 0.53
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +2
Query: 515 AMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHI 637
A ++ SI ER L+NT++ +GN++GKHRK H+
Sbjct: 36 AYIVGGSIPERASNGK--LYNTSLSYDPSGNLMGKHRKIHL 74
>SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)
Length = 1425
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +3
Query: 246 PENVKVGIVQHSIAVPTDR-PVNEQKKAIFNKVKKIIDVAGQEGVN 380
P N V I VP + P N+ ++A+F++V K+ ++ GQ+ V+
Sbjct: 971 PNNPSEEFVHKPILVPVMKSPRNDDERALFSRVSKVKNLWGQDLVD 1016
>SB_47367| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 914
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 164 NPRSLQLRRLTSTSPHTLSRPRTSRPDP 247
+PR + L+ S+SPHT R R+S DP
Sbjct: 687 SPRHVLLQEARSSSPHTSIRNRSSSSDP 714
>SB_19326| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +2
Query: 515 AMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRK 628
A ++ SI ER L+NT++ +GN++GKHRK
Sbjct: 82 AYIVGGSIPERASNGK--LYNTSLSYDPSGNLMGKHRK 117
>SB_16714| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 961
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2
Query: 835 FLRRIVADGFEDDLRLRFCPNIIQS 761
F R + DG++D LRL F P +I++
Sbjct: 319 FFRGVHLDGYQDGLRLLFVPEVIRT 343
>SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 770
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = -1
Query: 413 GHVPQLLETDDVNTLLAGNIDDFLDFIENCFLLLVDW 303
G VP + +NTLL GN D F NC LL W
Sbjct: 723 GLVPYWTKLFGINTLLVGNARDSHLFCRNCSGLLPYW 759
>SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1937
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 173 SLQLRRLTSTSPHTLSRPRTSRPDPRECEGRNSSAFHRG 289
S +R T+TSP T SRP+ ++ P C R ++G
Sbjct: 407 STTVRPQTTTSPPTTSRPQGAQCGPVRCHERGVCIVYQG 445
>SB_33687| Best HMM Match : Filament (HMM E-Value=0.1)
Length = 700
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 551 EKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYME 679
+K D LW A + D KH++N I R +F E ++Y E
Sbjct: 391 QKRFDTLWVKAKSMMDEET---KHKENAIKRSKEFEERSHYFE 430
>SB_18557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 277
Score = 28.3 bits (60), Expect = 8.6
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Frame = -3
Query: 663 DSLKSPTLGMWFLRCFPITFPVSLITTAVFQSMSECFSSLSNIEDTIT--IAYLW---RV 499
D+L SP W P+T ++ + Q+ S L+ +D + + W
Sbjct: 83 DNLSSPLTQTWDNSSSPLTQTRENSSSLLTQTRDNSSSPLTQTQDNSSSPLTQTWDNSSS 142
Query: 498 PEGRSWSARLQLIRQTRTTAASPLCRT 418
P ++W + QTR ++SPL +T
Sbjct: 143 PLTQTWDNSSSPLTQTRDNSSSPLTQT 169
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,704,859
Number of Sequences: 59808
Number of extensions: 646938
Number of successful extensions: 2281
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2280
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2490695009
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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