Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0898
         (875 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64370.1 68418.m08086 beta-ureidopropionase, putative / beta-...   124   1e-28
At2g27450.2 68415.m03318 carbon-nitrogen hydrolase family protei...    41   0.001
At2g27450.1 68415.m03317 carbon-nitrogen hydrolase family protei...    41   0.001
At5g12040.2 68418.m01407 carbon-nitrogen hydrolase family protei...    33   0.19 
At5g12040.1 68418.m01408 carbon-nitrogen hydrolase family protei...    33   0.19 
At5g24680.1 68418.m02917 expressed protein similar to unknown pr...    29   4.1  
At5g13340.1 68418.m01535 expressed protein                             29   4.1  
At3g09710.1 68416.m01150 calmodulin-binding family protein low s...    29   4.1  
At2g39980.1 68415.m04913 transferase family protein contains Pfa...    29   4.1  
At5g45720.1 68418.m05621 hypothetical protein                          28   7.1  
At5g40740.1 68418.m04944 expressed protein                             28   9.4  
At5g04610.1 68418.m00462 spermidine synthase-related / putrescin...    28   9.4  

>At5g64370.1 68418.m08086 beta-ureidopropionase, putative /
           beta-alanine synthase, putative similar to beta-alanine
           synthase [Dictyostelium discoideum] GI:14334061;
           contains Pfam profile PF00795: hydrolase,
           carbon-nitrogen family
          Length = 408

 Score =  124 bits (298), Expect = 1e-28
 Identities = 53/71 (74%), Positives = 61/71 (85%)
 Frame = +2

Query: 509 KYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNT 688
           KY MVIVS ILERD  H ++LWNTAV+I + GN+IGKHRKNHIPRVGDFNES YYMEG+T
Sbjct: 173 KYNMVIVSPILERDIDHGEVLWNTAVIIGNNGNIIGKHRKNHIPRVGDFNESTYYMEGDT 232

Query: 689 GHPVFATRYGQ 721
           GHPVF T +G+
Sbjct: 233 GHPVFETVFGK 243



 Score =  114 bits (274), Expect = 8e-26
 Identities = 52/87 (59%), Positives = 67/87 (77%)
 Frame = +3

Query: 246 PENVKVGIVQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQELWNMPFAFC 425
           P  V+VG++Q+SIA+PT  P ++Q + IF+K+K IID AG  GVNI+C QE W MPFAFC
Sbjct: 87  PRVVRVGLIQNSIALPTTAPFSDQTRGIFDKLKPIIDAAGVAGVNILCLQEAWTMPFAFC 146

Query: 426 TREKQPWCEFAESAEDGPTTTFLRELA 506
           TRE++ WCEFAE   DG +T FL+ELA
Sbjct: 147 TRERR-WCEFAEPV-DGESTKFLQELA 171



 Score = 31.5 bits (68), Expect = 0.76
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 700 ICDQIRARFAVNICFGRHHVLTG*CSDRNGA 792
           + + +  + AVNIC+GRHH L       NGA
Sbjct: 236 VFETVFGKIAVNICYGRHHPLNWLAFGLNGA 266


>At2g27450.2 68415.m03318 carbon-nitrogen hydrolase family protein
           low similarity to beta-alanine synthase [Drosophila
           melanogaster] GI:14334063; contains Pfam profile
           PF00795: hydrolase, carbon-nitrogen family
          Length = 326

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 17/50 (34%), Positives = 29/50 (58%)
 Frame = +2

Query: 572 WNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNTGHPVFATRYGQ 721
           +N+  +I   G  +G +RK+HIP    + E  Y+  G+TG  VF T++ +
Sbjct: 131 YNSIAIIDADGTDLGIYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAK 180


>At2g27450.1 68415.m03317 carbon-nitrogen hydrolase family protein
           low similarity to beta-alanine synthase [Drosophila
           melanogaster] GI:14334063; contains Pfam profile
           PF00795: hydrolase, carbon-nitrogen family
          Length = 299

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 17/50 (34%), Positives = 29/50 (58%)
 Frame = +2

Query: 572 WNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNTGHPVFATRYGQ 721
           +N+  +I   G  +G +RK+HIP    + E  Y+  G+TG  VF T++ +
Sbjct: 104 YNSIAIIDADGTDLGIYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAK 153


>At5g12040.2 68418.m01407 carbon-nitrogen hydrolase family protein
           similar to Nit protein 2 [Homo sapiens] GI:9367116;
           contains Pfam profile PF00795: hydrolase,
           carbon-nitrogen family
          Length = 294

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = +3

Query: 306 VNEQKKAIFNKVKKIIDVAGQEGVNIICFQELWNMPFAFCTREKQP-WCEFAESAED-GP 479
           V   KK   +  KK I+ A  +G  ++   E+WN P+   + +  P + E  ++  D  P
Sbjct: 97  VTSDKKRNISHAKKAIEEAASKGAKLVLLPEIWNSPY---SNDSFPVYAEEIDAGGDASP 153

Query: 480 TTTFLRELA 506
           +T  L E++
Sbjct: 154 STAMLSEVS 162



 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +2

Query: 551 EKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNT 688
           E+  D L+NT  V    G +  KHRK H+  + D      +ME  T
Sbjct: 176 ERVGDRLYNTCCVFGSDGELKAKHRKIHLFDI-DIPGKITFMESKT 220


>At5g12040.1 68418.m01408 carbon-nitrogen hydrolase family protein
           similar to Nit protein 2 [Homo sapiens] GI:9367116;
           contains Pfam profile PF00795: hydrolase,
           carbon-nitrogen family
          Length = 369

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = +3

Query: 306 VNEQKKAIFNKVKKIIDVAGQEGVNIICFQELWNMPFAFCTREKQP-WCEFAESAED-GP 479
           V   KK   +  KK I+ A  +G  ++   E+WN P+   + +  P + E  ++  D  P
Sbjct: 97  VTSDKKRNISHAKKAIEEAASKGAKLVLLPEIWNSPY---SNDSFPVYAEEIDAGGDASP 153

Query: 480 TTTFLRELA 506
           +T  L E++
Sbjct: 154 STAMLSEVS 162



 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +2

Query: 551 EKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNT 688
           E+  D L+NT  V    G +  KHRK H+  + D      +ME  T
Sbjct: 176 ERVGDRLYNTCCVFGSDGELKAKHRKIHLFDI-DIPGKITFMESKT 220


>At5g24680.1 68418.m02917 expressed protein similar to unknown
           protein (pir||T38384)
          Length = 399

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 526 DHHCVLMASSRRKVVVGPSSADSANSHHGCFSLVQ-NAKGMFHN 398
           DHH  L  +S       PSS+ SA+S +   SLVQ   K  F++
Sbjct: 37  DHHLALQLASDDHSSDDPSSSSSASSSNNVASLVQLQTKSQFYS 80


>At5g13340.1 68418.m01535 expressed protein
          Length = 242

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +2

Query: 173 SLQLRRLTSTSPHTLSRPRTSRPDPRECEGRNSSAFHRGAHRSSSQRAKE 322
           S + RR  S SP+T    ++  P PR+ +   SS+     HR + +  KE
Sbjct: 27  SRRTRRDRSRSPYTSRHKKSRSPAPRQHQRDRSSSLSPSEHRIAIEVKKE 76


>At3g09710.1 68416.m01150 calmodulin-binding family protein low
           similarity to SF16 protein [Helianthus annuus]
           GI:560150; contains Pfam profile PF00612: IQ
           calmodulin-binding motif
          Length = 454

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +2

Query: 107 KSSTEFILGGGITLKSN*KNPRSLQLRRLTSTSPHTLSR-PRTSRPDPRECEGRNSSAFH 283
           K+ST     GG T KS+ +N  +   +  T ++  T +R PR  RP P   + ++S    
Sbjct: 290 KNSTNRNSQGGETAKSSNRNKLNSSTKPNTPSASSTATRNPRKKRPIPSSIKSKSSDDEA 349

Query: 284 RGAHRS 301
           + + R+
Sbjct: 350 KSSERN 355


>At2g39980.1 68415.m04913 transferase family protein contains Pfam
           profile PF02458 transferase family
          Length = 482

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -1

Query: 599 CH*LQPQCSKVCPNASRPFLISRTRSPLR-TYGEFP 495
           CH +Q  C   CPN   P LIS  +  L  T   FP
Sbjct: 39  CHYIQKGCLFTCPNLPLPALISHLKHSLSITLTHFP 74


>At5g45720.1 68418.m05621 hypothetical protein
          Length = 900

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 587 VISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNTGHPVFATR 712
           V+ D+   IG+H +NHI      +  N+    N   PV   R
Sbjct: 9   VLKDSNGDIGEHLRNHIHLTNCIHLKNHMHNNNKQSPVLTDR 50


>At5g40740.1 68418.m04944 expressed protein
          Length = 741

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 542 ERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESN 667
           ER+ +    ++   +++    NVIG    N  PRVG F  SN
Sbjct: 8   ERELELESAMYTNCLLLGLDPNVIGLGASNGTPRVGLFRHSN 49


>At5g04610.1 68418.m00462 spermidine synthase-related / putrescine
           aminopropyltransferase-related contains weak similarity
           to Spermidine synthase 2 (EC 2.5.1.16) (Putrescine
           aminopropyltransferase 2) (SPDSY 2) (Swiss-Prot:O48659)
           [Hyoscyamus niger]
          Length = 434

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 808 FEDDLRLRFCPNIIQSRRGAVRSRCSPRILPVSGRKYRM 692
           F   LR +  PN++QS    +   CS   LP+ G ++++
Sbjct: 180 FRRRLRFKRMPNLVQSAIKIIPRSCSNPSLPLMGTEFKL 218


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,977,718
Number of Sequences: 28952
Number of extensions: 438888
Number of successful extensions: 1344
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1343
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)