Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0897
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    28   1.5  
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    27   2.6  
SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces pom...    26   4.5  
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy...    25   7.9  

>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
            orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 162  TSNELRQNEFESDYMEVAGWGXTXTQNYNIYSKKGST 272
            TSN + Q    S +  V  W  + T NY  Y+  G T
Sbjct: 1490 TSNPIYQGSGTSTWSTVRQWNGSATYNYTYYTTGGFT 1526


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 531 AFGATGRSP*ETTPKTYQLLALGDWPISAPPESPRQE 421
           +F   GR   E+ P   +  +LG  P+S PP SP  E
Sbjct: 3   SFRKRGRRDSESLPFESENSSLGATPLSLPPSSPPPE 39


>SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 375

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 476 NWYVFGVVSYGLRPVAPKAGQASTPES 556
           +W   G++ YG+ P   K   + TPES
Sbjct: 216 DWLRAGIMLYGISPFLSKNKDSKTPES 242


>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 424

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 523 TEGWXGVYTRVGSFMDWILS 582
           T GW G+   +  F DWI++
Sbjct: 345 TSGWWGMARHINYFGDWIMA 364


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,665,524
Number of Sequences: 5004
Number of extensions: 52041
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)