Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0897
(693 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1505 + 30635572-30635802,30636977-30637135,30637217-306373... 32 0.50
12_01_0901 - 8736190-8736240,8736426-8736821 29 4.6
10_08_0352 + 17091637-17091945,17092049-17096617,17096975-170971... 28 6.1
02_05_0151 - 26299042-26299207,26301678-26301851,26301926-263019... 28 6.1
10_03_0021 + 7129786-7130117,7130227-7130347,7131048-7131136,713... 28 8.1
01_05_0660 - 24071523-24071780,24071873-24072127,24072209-240723... 28 8.1
01_05_0658 - 24043655-24043945,24044003-24044257,24044359-240445... 28 8.1
01_01_0064 + 509846-510556 28 8.1
>06_03_1505 +
30635572-30635802,30636977-30637135,30637217-30637328,
30638004-30638123,30638264-30638415,30638938-30638972,
30639077-30639233,30639328-30639381,30639502-30639594,
30639685-30639827,30639939-30640009,30640323-30640453
Length = 485
Score = 31.9 bits (69), Expect = 0.50
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +3
Query: 45 IIAHENYDPNDKDQQNDIALLRLSRNAQFNDFVSPICLPTSNELRQNEFESDYMEVAGW 221
I+ H++ P ND L+ L N+ F+ F+S PT+ +L N E ++V W
Sbjct: 26 IVHHDDEAPKIPGCSNDFILVGLLSNSSFSFFLSGFHSPTATDL-SNFSEDSRVKVQSW 83
>12_01_0901 - 8736190-8736240,8736426-8736821
Length = 148
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = -1
Query: 483 YQLLALGDW--PISAPPESPRQESXPAKP 403
YQ L L D P+S PP S RQ+ P +P
Sbjct: 73 YQPLRLADLQVPLSPPPPSTRQQQLPPRP 101
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = -1
Query: 483 YQLLALGDW--PISAPPESPRQESXPAKP 403
YQ L L D P+S PP S RQ+ P +P
Sbjct: 38 YQPLHLDDLQVPLSPPPPSTRQQQPPPRP 66
>10_08_0352 + 17091637-17091945,17092049-17096617,17096975-17097187,
17097266-17097494,17097857-17097981
Length = 1814
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -1
Query: 456 PISAPPESPRQES-XPAKPPAHICLLVTRRSTLLYTLAHSSLFTIGTRTXSFTSDSDPGG 280
PIS PPE +E+ P +PP + VT ++ + S+ ++G+ + S S + G
Sbjct: 1664 PISPPPEKEEEEAISPPQPPKREIIRVTTKA--IVKEKASAFSSVGSSSSSGKSGAGGGA 1721
Query: 279 L 277
L
Sbjct: 1722 L 1722
>02_05_0151 -
26299042-26299207,26301678-26301851,26301926-26301987,
26302082-26302329,26303341-26303416,26303796-26303987,
26304109-26304225
Length = 344
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 404 GXAGXDSCRGDSGGALMGQ 460
G AG DSC G+ GG L G+
Sbjct: 72 GIAGVDSCYGEPGGVLSGR 90
>10_03_0021 +
7129786-7130117,7130227-7130347,7131048-7131136,
7131375-7131459,7131609-7131771,7132861-7132937,
7133016-7133160,7133236-7133537,7133615-7133720,
7134781-7134935,7135556-7135712,7135799-7135891,
7136232-7136359,7136439-7136696,7136855-7137145,
7137235-7137318,7138335-7138468,7138557-7138784,
7139778-7139958,7140021-7140108,7140268-7140434,
7140750-7141012,7141117-7141120
Length = 1216
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +2
Query: 335 REECANVYSNVDRRVTNKQICAGGXAGXDSCRGDSGG 445
R E N+ S+ RV ICA G D RG SGG
Sbjct: 294 RREKHNLVSDYVLRVLGLDICADTPVGSDMERGVSGG 330
>01_05_0660 -
24071523-24071780,24071873-24072127,24072209-24072380,
24072458-24072685,24072785-24072918,24073005-24073088,
24073231-24073521,24073599-24073931,24074016-24074266,
24074354-24074620,24074707-24074867,24074978-24075294,
24075386-24075667,24075753-24076054,24076147-24076237,
24076326-24076379,24076497-24076573,24076700-24076859,
24077129-24077213,24077421-24077630,24077736-24078097
Length = 1457
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +2
Query: 293 ESDVKLXVRVPIVNREECANVYSNVDRRVTNKQICAGGXAGXDSCRGDSGG 445
++D+ ++ + +E ANV ++ ++ +ICA G + RG SGG
Sbjct: 290 DADIDAFMKAAAMGGQE-ANVNTDYILKILGLEICADTMVGDEMLRGISGG 339
>01_05_0658 -
24043655-24043945,24044003-24044257,24044359-24044530,
24044617-24044844,24045688-24045821,24045908-24045991,
24046202-24046492,24046571-24046903,24047002-24047246,
24047476-24047742,24048305-24048465,24048556-24048872,
24048966-24049247,24049325-24049626,24049699-24049789,
24049881-24049934,24050028-24050104,24050192-24050367,
24051331-24051540,24051626-24052029
Length = 1457
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +2
Query: 293 ESDVKLXVRVPIVNREECANVYSNVDRRVTNKQICAGGXAGXDSCRGDSGG 445
++DV ++ + +E +N+ ++ ++ +ICA G D RG SGG
Sbjct: 281 DADVDAFMKASAMEGQE-SNLITDYILKILGLEICADTMVGDDMVRGISGG 330
>01_01_0064 + 509846-510556
Length = 236
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Frame = -3
Query: 385 ISHASIHV---AIYVSTLLSVHYRHSNL*FHIRFGSWWPSI-VDPF 260
++HA+IH+ A Y+S++L + RH++ F S PS+ +PF
Sbjct: 72 LTHATIHLHNAAYYLSSVLRIALRHADADASTDFSSKLPSLAANPF 117
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,504,427
Number of Sequences: 37544
Number of extensions: 348747
Number of successful extensions: 1083
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -