Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0897
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    47   1e-05
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    42   4e-04
Z71185-3|CAA94905.2|  427|Caenorhabditis elegans Hypothetical pr...    34   0.11 
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    31   1.0  
U39848-2|AAT81211.1|  279|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    29   3.2  

>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
 Frame = +2

Query: 314 VRVPIVNREECANVYSNVDRRVTNKQICAGGXAGX-DSCRGDSGGALMGQSPKANNWYVF 490
           + VP+++   C+++ + + R      +CAG   G  DSC+GDSGG LM    +  +W + 
Sbjct: 199 IHVPLLSTLFCSSLPNYIGRIHLPSMLCAGYSYGKIDSCQGDSGGPLM--CARDGHWELT 256

Query: 491 GVVSYGLRPVAP-KAGQASTPESDLLWIGFFPN 586
           GVVS+G+    P   G      S   WI    N
Sbjct: 257 GVVSWGIGCARPGMPGVYGNVHSASTWINLEMN 289


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
 Frame = +2

Query: 320 VPIVNREECANVYSNVDRRVTNKQICAGGX-AGXDSCRGDSGGALMGQSPKANNWYVFGV 496
           +PI+NR +C N  S +   ++    CAG    G DSC+GDSGG    +  +   + + GV
Sbjct: 173 IPIINRFDCVNS-SQIYSSMSRSAFCAGYLEGGIDSCQGDSGGPFACRR-EDGAFVLAGV 230

Query: 497 VSYG 508
           +S+G
Sbjct: 231 ISWG 234



 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 90  NDIALLRLSR-NAQFNDFVSPICLPTSNELRQNEFESDYMEVAGWG 224
           +DIA+L +     +FN++  PICLP+ + +           V+GWG
Sbjct: 116 HDIAILEIPYPGIEFNEYAQPICLPSKDFVYT---PGRQCVVSGWG 158


>Z71185-3|CAA94905.2|  427|Caenorhabditis elegans Hypothetical
           protein C35A5.4 protein.
          Length = 427

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 23/84 (27%), Positives = 33/84 (39%)
 Frame = -1

Query: 591 SKFGKNPIHKRSDSGVDAXPAFGATGRSP*ETTPKTYQLLALGDWPISAPPESPRQESXP 412
           SK  KN   KR    +          R+P  TT KT  +      P  A P +P +   P
Sbjct: 274 SKDNKNQRDKREGGVMKMFRNLNPFDRTPTPTTKKTQSVTPSNSTPSPAKPATPTKTPTP 333

Query: 411 AKPPAHICLLVTRRSTLLYTLAHS 340
            K P      +++  T+   L+HS
Sbjct: 334 TKKPVENNETLSQVKTVSKALSHS 357


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/65 (24%), Positives = 25/65 (38%)
 Frame = +2

Query: 314 VRVPIVNREECANVYSNVDRRVTNKQICAGGXAGXDSCRGDSGGALMGQSPKANNWYVFG 493
           ++V  +  E  A    N    +     C       + C GDSGG L      +   ++  
Sbjct: 233 IQVLTLATETLATCEENWGTSIPFDSFCTAEEEDKNVCSGDSGGGLTFHQSDSAREFIIA 292

Query: 494 VVSYG 508
           +VSYG
Sbjct: 293 IVSYG 297


>U39848-2|AAT81211.1|  279|Caenorhabditis elegans Hypothetical
           protein B0286.6 protein.
          Length = 279

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 75  DKDQQNDIALLRLSRNAQFNDFVSPICLPTSNEL 176
           D++  NDIA+  L    +F+  + P CLP++ ++
Sbjct: 116 DRESFNDIAVFELEEPIEFSKDIFPACLPSAPKI 149


>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/65 (29%), Positives = 33/65 (50%)
 Frame = +3

Query: 36  VQQIIAHENYDPNDKDQQNDIALLRLSRNAQFNDFVSPICLPTSNELRQNEFESDYMEVA 215
           V++   H  Y  N++   NDIALLR+S +      + P+CL   +     ++++    V 
Sbjct: 107 VKEAYIHSGY--NNQTADNDIALLRISSDLS-KLGIKPVCLVHDDSKLLKQYKNGV--VI 161

Query: 216 GWGXT 230
           G+G T
Sbjct: 162 GYGLT 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,773,310
Number of Sequences: 27780
Number of extensions: 292050
Number of successful extensions: 772
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)