Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0897
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55800.1 68418.m06954 DC1 domain-containing protein contains ...    29   2.2  
At5g01690.1 68418.m00086 cation/hydrogen exchanger, putative (CH...    29   2.2  
At2g44350.2 68415.m05517 citrate synthase, mitochondrial, putati...    28   6.8  
At2g44350.1 68415.m05516 citrate synthase, mitochondrial, putati...    28   6.8  
At2g20980.1 68415.m02483 expressed protein                             28   6.8  
At3g04660.1 68416.m00499 F-box family protein contains F-box dom...    27   8.9  

>At5g55800.1 68418.m06954 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 578

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = -1

Query: 255 CRYCSSVXQFXPIRLLPYSHFQIHSASTRCLSVDRWDLRNH*TAHSLRVSRGQYRSAGLC 76
           C +C+S+ +F P  +     F IH        V R    +H  + +  +  G + S G+C
Sbjct: 200 CHFCASIKKFDPTYICIQCVFAIHKDCRGFPHVIRISRHHHRISFTSSLLSGTF-SCGVC 258

Query: 75  R--LDHNF 58
           R  +D+N+
Sbjct: 259 REQVDNNY 266


>At5g01690.1 68418.m00086 cation/hydrogen exchanger, putative
           (CHX27)  monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 732

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 60  NYDPNDKDQQNDIALLRLSRNAQFNDFVSPICLPTSN 170
           N D  +K++   +++L+   NA  ND    IC+PT+N
Sbjct: 228 NVDLPNKNRAAFLSVLQTEMNADDNDIGDSICVPTTN 264


>At2g44350.2 68415.m05517 citrate synthase, mitochondrial, putative
           strong similarity to SP|P20115 Citrate synthase,
           mitochondrial precursor  {Arabidopsis thaliana};
           contains Pfam profile PF00285: Citrate synthase
          Length = 474

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = +2

Query: 203 YGSSRMGXNXNTELQYLQQEGIYDTR--PPGSESDVKLXVRVPIVNREECANVYSNVDRR 376
           + S  M     +E Q   + GI+ ++   P  E  + L  RVP+V       +Y N D  
Sbjct: 176 FASGVMALQVQSEFQKAYENGIHKSKFWEPTYEDCLNLIARVPVVAAYVYRRMYKNGDSI 235

Query: 377 VTNKQICAG 403
            ++K +  G
Sbjct: 236 PSDKSLDYG 244


>At2g44350.1 68415.m05516 citrate synthase, mitochondrial, putative
           strong similarity to SP|P20115 Citrate synthase,
           mitochondrial precursor  {Arabidopsis thaliana};
           contains Pfam profile PF00285: Citrate synthase
          Length = 473

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = +2

Query: 203 YGSSRMGXNXNTELQYLQQEGIYDTR--PPGSESDVKLXVRVPIVNREECANVYSNVDRR 376
           + S  M     +E Q   + GI+ ++   P  E  + L  RVP+V       +Y N D  
Sbjct: 175 FASGVMALQVQSEFQKAYENGIHKSKFWEPTYEDCLNLIARVPVVAAYVYRRMYKNGDSI 234

Query: 377 VTNKQICAG 403
            ++K +  G
Sbjct: 235 PSDKSLDYG 243


>At2g20980.1 68415.m02483 expressed protein
          Length = 396

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = +2

Query: 221 GXNXNTELQYLQQEGIYDTRPPGSESDVKLXVR-VPIVNREECANVYSNVDRRVTN 385
           G N  T  + L+ +GIY   PP   S  K   + V +++ E      S  D+   N
Sbjct: 263 GGNLRTAFRDLKSQGIYTVEPPADRSGNKKTTQPVRVLSVEGLRKALSGADKVTPN 318


>At3g04660.1 68416.m00499 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 390

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 518 QGEVRRKPPRKRTNYWP*AIGPLARLLSLLGRSP 417
           +G   +KP  KR  Y P +I PL   + +L +SP
Sbjct: 4   RGRKSKKPEEKRAEYDPSSILPLELKIEILMKSP 37


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,962,944
Number of Sequences: 28952
Number of extensions: 277393
Number of successful extensions: 798
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)