Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0896
         (657 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.7  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     22   3.9  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   6.7  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 107  NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEA 229
            N+I  + W +  D  G     AYHGD  +  E I    ++A
Sbjct: 911  NRIRNQRWIVNRDTSGATGPFAYHGDQWVGFEDIKSVRDKA 951


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 328 RTEDLSERSGADRVHGAGLQVDENGRGT 245
           +  DLS R+G+   H   L + ++G G+
Sbjct: 196 KARDLSPRNGSPTDHSPVLNLSKSGGGS 223


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -2

Query: 650 FQLAGELRESHLYGSTTVSDTLAEGTTEYVFMILSG 543
           FQL+       ++G TTV+ T  +     + ++ SG
Sbjct: 39  FQLSETTAPRSIHGGTTVTITATQTGESEMMVVTSG 74


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,592
Number of Sequences: 336
Number of extensions: 3468
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)