Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0896
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   1.1  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   1.5  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   3.4  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   5.9  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   5.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.8  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 17/58 (29%), Positives = 23/58 (39%)
 Frame = +3

Query: 426 SAKNQNLAIAYRASNLHIPSVAAPGPXWHPPHLKDP*RVPRQNHEHILSSPLGQSIRH 599
           ++ + +L+ A   S  H P V      + PP        P Q H H  SSP  Q   H
Sbjct: 284 ASHHSHLSSALGRSACHSPGVYPSTAGFLPPSYHPHQHHPSQYHPHRGSSPHHQHGNH 341


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +2

Query: 404 VDSVLDVVRKESESCDCLQG 463
           +DS+++++R   ++CD L G
Sbjct: 106 IDSIINIIRVRVDACDRLWG 125


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 250 GTYLXAGGFIVVY 212
           GT+L +GGF +VY
Sbjct: 70  GTFLGSGGFGIVY 82


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 249 PRPFSSTWSPAPWTLSA 299
           P  F S W P P+ L+A
Sbjct: 65  PEFFDSLWQPDPYFLNA 81


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 206 CAPTASQSPHGRHRWGRCRARQ 141
           C+P   Q+P  R   GR R R+
Sbjct: 392 CSPPPRQTPPSRKESGRRRRRR 413


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 12/44 (27%), Positives = 18/44 (40%)
 Frame = +3

Query: 495 PGPXWHPPHLKDP*RVPRQNHEHILSSPLGQSIRHCRRTIQMRL 626
           P P   PP    P   P QN   ++ SP    I   ++ +Q  +
Sbjct: 40  PNPSQGPPPGGPPGAPPSQNPSQMMISP-ASGIHQMQQLLQQHI 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,355
Number of Sequences: 438
Number of extensions: 4077
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)