Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0895
(618 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0861 - 28348669-28348711,28349471-28349557,28349640-283497... 36 0.019
07_03_1106 + 24017601-24019955 31 0.97
12_01_0223 + 1708420-1708512,1708790-1709008,1709117-1709330,170... 30 1.7
03_06_0452 - 34028791-34028818,34028977-34029020,34029457-34030017 29 3.9
08_02_1160 - 24793708-24794796,24794888-24794951,24795028-247951... 28 5.2
07_03_0204 - 15150854-15151147,15152230-15153689,15154055-151542... 28 6.8
06_01_0757 + 5659081-5659605,5659694-5659919,5659994-5660333,566... 27 9.0
03_01_0392 + 3051469-3051876,3052414-3052832,3053992-3054061,305... 27 9.0
02_02_0457 + 10503801-10507358 27 9.0
01_03_0285 - 14604499-14604608,14604692-14605203,14605339-146054... 27 9.0
>03_05_0861 -
28348669-28348711,28349471-28349557,28349640-28349784,
28350832-28350900,28351147-28351207,28351375-28351493,
28351659-28351713
Length = 192
Score = 36.3 bits (80), Expect = 0.019
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 184 GESNVLDNRENT-FKG*IFPRKQRQIRCFFEEGAIDADGXLTVEPEISLNKVGH 342
G +V +++ K F + I FFEE A DG L E+S+NKVGH
Sbjct: 48 GAGDVFSTKDHRQVKNDFFFKSAENISFFFEEKAFGDDGCLKQAKELSINKVGH 101
>07_03_1106 + 24017601-24019955
Length = 784
Score = 30.7 bits (66), Expect = 0.97
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -3
Query: 208 CCRERCSLLYVWQVFSEFQSSGF--DFITFRNMKKIF 104
CCR R QVF E ++SGF D +TF ++ ++
Sbjct: 252 CCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVY 288
>12_01_0223 +
1708420-1708512,1708790-1709008,1709117-1709330,
1709901-1710001
Length = 208
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -3
Query: 547 IQKPTGGVGSVYRMLRLDVE 488
+++PTG +G VY++ LDVE
Sbjct: 171 VEQPTGNIGEVYKLADLDVE 190
>03_06_0452 - 34028791-34028818,34028977-34029020,34029457-34030017
Length = 210
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 468 WHWFRSGSTSRRNILYT 518
WH FR STSRR++L++
Sbjct: 114 WHAFRGDSTSRRSVLFS 130
>08_02_1160 -
24793708-24794796,24794888-24794951,24795028-24795146,
24795496-24795612,24796365-24796406,24797342-24797506,
24797806-24797898,24798190-24798291,24798360-24798501,
24799301-24799651,24799741-24799839,24800019-24800230,
24800394-24800429
Length = 876
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +2
Query: 89 GYAILEDFLHVAECDEIKAAGLEF--TENLPDIEERATFSTTEKTHLKD 229
G A +E A+CDE+ +AG+E+ EN P E A + + L+D
Sbjct: 693 GSAPVEQPTGFADCDEVTSAGIEYHSLENSPLTERPADAAGVQYKMLED 741
>07_03_0204 -
15150854-15151147,15152230-15153689,15154055-15154266,
15155123-15155275,15155569-15155630,15155733-15155785,
15156380-15156452,15156499-15156619,15156699-15156878,
15157333-15157391
Length = 888
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 173 PDIEERATFSTTEKTHLKDKYFLESNDR*GVSSK 274
P++ ER T +E L+D ++SND G+ SK
Sbjct: 88 PEVLERVTTIESEILQLEDAISIQSNDNLGLRSK 121
>06_01_0757 +
5659081-5659605,5659694-5659919,5659994-5660333,
5660677-5661025,5661121-5661723
Length = 680
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 362 RFSXVTRIVN-A*RAFAKSLALSSRLWCKACIFLRTLALVPXWFHIKTQHSV 514
R S + R++N + R + L +S ++ K C LR L+ FH+ + V
Sbjct: 55 RTSELIRLINISDRTCTQQLRMSRAVFYKLCARLRNKGLLVDTFHVSVEEQV 106
>03_01_0392 +
3051469-3051876,3052414-3052832,3053992-3054061,
3054923-3055016,3056587-3056907,3057298-3057403,
3058807-3058887,3059336-3059402,3059715-3060239,
3060328-3060553,3060628-3060967,3061311-3061659,
3061755-3062357
Length = 1202
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 362 RFSXVTRIVN-A*RAFAKSLALSSRLWCKACIFLRTLALVPXWFHIKTQHSV 514
R S + R++N + R + L +S ++ K C LR L+ FH+ + V
Sbjct: 577 RTSELIRLINISDRTCTQQLRMSRAVFYKLCARLRNKGLLVDTFHVSVEEQV 628
>02_02_0457 + 10503801-10507358
Length = 1185
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 58 RLNKEPVDYGRLRDPRRFSSC 120
RL P D+ +LR+ RRF SC
Sbjct: 680 RLENLPSDFNKLRNLRRFDSC 700
>01_03_0285 -
14604499-14604608,14604692-14605203,14605339-14605418,
14605597-14605699,14605759-14605907,14606088-14606180,
14606289-14606675,14607690-14608124,14608198-14608311,
14608405-14608453,14608684-14608843,14608941-14609499
Length = 916
Score = 27.5 bits (58), Expect = 9.0
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Frame = +1
Query: 58 RLNKEPVDYGRLRDPRRFSSCCGM**NQSRWIGIH*KLARHRG-ESNVL--DNRENTFKG 228
R N+ VD LR RF C GM + + + LAR RG VL D ++ ++
Sbjct: 167 RFNQLQVDGVLLRS--RFGKCIGMDGSDEFAVQMFDSLARKRGIVKQVLTKDELKDFYEQ 224
Query: 229 *IFPRKQRQIRCFFEEGAIDADGXLTVE 312
++R FF+ +ADG LT E
Sbjct: 225 LTDQGFDNRLRTFFDMVDKNADGRLTAE 252
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,629,820
Number of Sequences: 37544
Number of extensions: 305297
Number of successful extensions: 697
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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