Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0895
         (618 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51929| Best HMM Match : ARID (HMM E-Value=1.2)                      40   0.002
SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38)                   29   3.0  
SB_11899| Best HMM Match : LRR_1 (HMM E-Value=1.2e-20)                 29   3.0  
SB_9266| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.3  

>SB_51929| Best HMM Match : ARID (HMM E-Value=1.2)
          Length = 391

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 19/63 (30%), Positives = 33/63 (52%)
 Frame = +2

Query: 68  KSQLITDGYAILEDFLHVAECDEIKAAGLEFTENLPDIEERATFSTTEKTHLKDKYFLES 247
           +SQ  +DGY ++E+FL + E  E++ A     ++L   +   +   T    + D YFL S
Sbjct: 312 QSQFASDGYVVIENFLSLDEVQELREAMRNIVDDLDLSQNPLSVFKTGDDQVGDDYFLTS 371

Query: 248 NDR 256
            D+
Sbjct: 372 GDK 374


>SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38)
          Length = 667

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -3

Query: 472 CQGS*KYTCFAPQPAR*SQALCKCSSRVHYTCN 374
           C    +Y C  P+P     + C   SR+ Y CN
Sbjct: 509 CFDGCRYNCILPKPDPAEHSTCPVMSRIPYMCN 541


>SB_11899| Best HMM Match : LRR_1 (HMM E-Value=1.2e-20)
          Length = 681

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -1

Query: 270 EETPYLSLLSRKYLSFKCV--FSVVENVALSSMSGKFSVNSNPAALISSHSAT*RKS 106
           EE   LS L R +LSF C+  F  +  +  S+   + S++ NP A   ++  T  KS
Sbjct: 317 EEVDRLSNLQRLFLSFNCISRFEDINCLTRSTSITELSLDGNPFASDVTYKQTVLKS 373


>SB_9266| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1490

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 543  WIALEEATVXNGCLWLSRGSHRS 611
            W A+E+ T  NGCL +  G+H++
Sbjct: 1259 WTAMEKVTRQNGCLVVLPGTHKT 1281


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,176,310
Number of Sequences: 59808
Number of extensions: 364119
Number of successful extensions: 806
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)