Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0895
         (618 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110479-7|CAB54355.1|  288|Caenorhabditis elegans Hypothetical ...   107   5e-24
AC025721-10|AAK29908.2| 1019|Caenorhabditis elegans Hypothetical...    31   0.50 
Z82282-7|CAB05280.2|  584|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AC024806-3|AAP13749.1|  363|Caenorhabditis elegans Serpentine re...    28   4.6  
Z92804-3|CAB07250.1|  492|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AF077541-10|AAM54170.2|  179|Caenorhabditis elegans Cysteinyl tr...    28   6.1  
Z82287-6|CAB05318.1|  312|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z80223-9|CAB02322.1|  312|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF026202-5|AAB71241.2|  285|Caenorhabditis elegans Hypothetical ...    27   8.1  

>AL110479-7|CAB54355.1|  288|Caenorhabditis elegans Hypothetical
           protein Y105C5B.9 protein.
          Length = 288

 Score =  107 bits (258), Expect = 5e-24
 Identities = 49/92 (53%), Positives = 63/92 (68%)
 Frame = +1

Query: 235 FPRKQRQIRCFFEEGAIDADGXLTVEPEISLNKVGHALHLLHPIFXCYTYSERVKSICKE 414
           F     +IR FFEEGA+D DG LTV  + +LNK+GH LH L P F   T++ ++++I KE
Sbjct: 63  FLNSSDKIRFFFEEGAVDKDGELTVPKDKALNKIGHGLHFLDPTFEKMTFNSKIQNIFKE 122

Query: 415 LGFIEPAVVQSMYIFKNPGIGSXVVPHQDATF 510
           +G+ EP VVQSMYIFK P IG  V  H D+TF
Sbjct: 123 IGYQEPGVVQSMYIFKQPKIGGAVTDHVDSTF 154



 Score = 36.3 bits (80), Expect = 0.018
 Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
 Frame = +2

Query: 65  IKSQLITDGYAILEDFLHVAECDEIKAAGLEFTENLPDIEE--RATFST-TEKTHLKDKY 235
           ++ +   DG+ ++E+  +  E DE+K +  +   ++ D+ E  ++ FST  E  H  D Y
Sbjct: 4   LREKFERDGFVVVENVFNDQEIDEMKKSISKIVNDM-DLAEHPKSVFSTYDEDKHAADSY 62

Query: 236 FLESNDR 256
           FL S+D+
Sbjct: 63  FLNSSDK 69



 Score = 35.9 bits (79), Expect = 0.023
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = +3

Query: 537 GFWIALEEATVXNGCLWLSRGSHR 608
           G WIA++EA+V NGCL    GSH+
Sbjct: 165 GVWIAIDEASVENGCLSFIPGSHK 188


>AC025721-10|AAK29908.2| 1019|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.1 protein.
          Length = 1019

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 18/61 (29%), Positives = 32/61 (52%)
 Frame = +2

Query: 2   DRRYLNSFCFCKFIASIMHDSIKSQLITDGYAILEDFLHVAECDEIKAAGLEFTENLPDI 181
           +RRY   FCF +     M   +++ ++ D Y +   ++ +   D +K A  E++ENL  I
Sbjct: 423 ERRYNVGFCFERSHGIDMDQVMEAFMLFDEYPMKRQYMELI-VDSLKIAFQEWSENLKGI 481

Query: 182 E 184
           E
Sbjct: 482 E 482


>Z82282-7|CAB05280.2|  584|Caenorhabditis elegans Hypothetical
           protein T07G12.10 protein.
          Length = 584

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +2

Query: 89  GYAILEDFLHV--AECDEIKAAGLEFTENLPDIEERATFSTTEKTHLKDKYFLESNDR 256
           GY +L+D   +  A C+E++   +   EN+P +    TFS T      + Y    N +
Sbjct: 199 GYEVLDDSNKILTANCEEVE---MSLCENIPGVNNARTFSNTPYDDFLNIYSTPKNPK 253


>AC024806-3|AAP13749.1|  363|Caenorhabditis elegans Serpentine
           receptor, class w protein40 protein.
          Length = 363

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 20  SFCFCKFIASIMHDSIKSQLITDGYAILEDFLHVAECDEIK 142
           + CF  F A+I+H  I SQ      ++   F+ +A CD I+
Sbjct: 43  TICFVGFFANIVHLIILSQKSMRNLSVNVFFIGIAICDTIR 83


>Z92804-3|CAB07250.1|  492|Caenorhabditis elegans Hypothetical
           protein K05D4.4 protein.
          Length = 492

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 68  KSQLITDGYAILEDFLHVAECDEIKAAGLEFTENLPDIEE-RATFSTTEK 214
           K Q + +G A +E FL  A         L+F+ NLPD+++ +  F T  K
Sbjct: 433 KRQCLGEGLARMELFLFFANIFNRYDVQLDFSGNLPDLDKSKDNFVTPRK 482


>AF077541-10|AAM54170.2|  179|Caenorhabditis elegans Cysteinyl trna
           synthetase protein2, isoform a protein.
          Length = 179

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +2

Query: 152 LEFTENLPDIEERATFSTTEKTHLKDKYFLESNDR*GVSSKREPSTPMXILQSNRRF 322
           +EF  N+ D++++       ++HL   YF ES       SK   +T +  L  ++RF
Sbjct: 92  VEFIMNITDVDDKI-IKRARQSHLLKSYFNESLHLNSTHSKLLQTTFIVYLHKSKRF 147


>Z82287-6|CAB05318.1|  312|Caenorhabditis elegans Hypothetical
           protein ZK550.6 protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 543 WIALEEATVXNGCLWLSRGSHR 608
           W A+E+ T  NGCL +  G+H+
Sbjct: 160 WTAMEKITRANGCLVVVPGTHK 181


>Z80223-9|CAB02322.1|  312|Caenorhabditis elegans Hypothetical
           protein ZK550.6 protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 543 WIALEEATVXNGCLWLSRGSHR 608
           W A+E+ T  NGCL +  G+H+
Sbjct: 160 WTAMEKITRANGCLVVVPGTHK 181


>AF026202-5|AAB71241.2|  285|Caenorhabditis elegans Hypothetical
           protein C10E2.1 protein.
          Length = 285

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 504 CVLMWNHXGTNARVLKNIHALHHSRLDKAKL 412
           C   W++    A +LK   ALH S++ K K+
Sbjct: 215 CFKKWHNEKDRAELLKAKRALHESKIGKVKI 245


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,440,941
Number of Sequences: 27780
Number of extensions: 268013
Number of successful extensions: 689
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)