Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0895
         (618 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g01490.1 68415.m00072 phytanoyl-CoA dioxygenase (PhyH) family...   108   3e-24
At5g01750.2 68418.m00094 expressed protein contains Pfam profile...    28   4.3  
At5g01750.1 68418.m00093 expressed protein contains Pfam profile...    28   4.3  
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ...    28   5.7  
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ...    28   5.7  
At1g73810.1 68414.m08546 expressed protein contains Pfam profile...    28   5.7  
At2g46340.1 68415.m05768 phytochrome A supressor spa1 (SPA1) ide...    27   10.0 
At1g52570.1 68414.m05935 phospholipase D alpha 2 / PLD alpha 2 (...    27   10.0 

>At2g01490.1 68415.m00072 phytanoyl-CoA dioxygenase (PhyH) family
           protein contains Pfam profile PF05721: Phytanoyl-CoA
           dioxygenase (PhyH); weak similarity to Phytanoyl-CoA
           dioxygenase, peroxisomal precursor (EC 1.14.11.18)
           (Phytanoyl-CoA alpha-hydroxylase) (PhyH) (Phytanic acid
           oxidase) (Swiss-Prot:O14832) [Homo sapiens]
          Length = 283

 Score =  108 bits (259), Expect = 3e-24
 Identities = 60/135 (44%), Positives = 79/135 (58%)
 Frame = +1

Query: 205 NRENTFKG*IFPRKQRQIRCFFEEGAIDADGXLTVEPEISLNKVGHALHLLHPIFXCYTY 384
           N+++T     F   ++ I  FFEE A   DG L    ++S+NKVGHALH L P++  +TY
Sbjct: 58  NQKHTTDNYFFESAEK-ISFFFEEKAFGDDGKLKQPKQLSINKVGHALHELDPLYKDFTY 116

Query: 385 SERVKSICKELGFIEPAVVQSMYIFKNPGIGSXVVPHQDATFCTQSQLPQLASG*LLKKP 564
           S +  S+   LG+  P V+QSMYIFK PGIG  VVPHQD +F      PQ  +G L    
Sbjct: 117 SSKFSSLASSLGYRRPVVMQSMYIFKQPGIGGEVVPHQDNSFVYTD--PQSCTG-LWIAL 173

Query: 565 QFXTAVXGCLEALTG 609
           +  T V GCL A+ G
Sbjct: 174 EDSTLVNGCLWAIPG 188



 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 18/36 (50%), Positives = 26/36 (72%)
 Frame = +3

Query: 504 NILYTEPTPPVGFWIALEEATVXNGCLWLSRGSHRS 611
           + +YT+P    G WIALE++T+ NGCLW   GSH++
Sbjct: 157 SFVYTDPQSCTGLWIALEDSTLVNGCLWAIPGSHKN 192



 Score = 31.9 bits (69), Expect = 0.35
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +2

Query: 83  TDGYAILEDFLHVAECDEIKAAGLEFTE--NLPDIEERATFSTTEKTHLKDKYFLESNDR 256
           + GY ++E F   A  DEI+       E  N  D    + FST  + H  D YF ES ++
Sbjct: 17  SQGYLVIESF---ASEDEIRGLRKRMDELLNQFDCSVSSIFSTKNQKHTTDNYFFESAEK 73


>At5g01750.2 68418.m00094 expressed protein contains Pfam profile
           PF04525: Protein of unknown function (DUF567)
          Length = 217

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 444 KHVYF*EPWHWFRSGSTSRRNILYT 518
           K V   + W  FR GST +R++LYT
Sbjct: 94  KMVSMHDRWQVFRGGSTDQRDLLYT 118


>At5g01750.1 68418.m00093 expressed protein contains Pfam profile
           PF04525: Protein of unknown function (DUF567)
          Length = 174

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 444 KHVYF*EPWHWFRSGSTSRRNILYT 518
           K V   + W  FR GST +R++LYT
Sbjct: 94  KMVSMHDRWQVFRGGSTDQRDLLYT 118


>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9
           WD-40 repeats domain (PF00400) (6 weak)
          Length = 1120

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +1

Query: 280 AIDADGXLTVEPEISLNKVGHAL 348
           AIDADG L   P I  NK G  L
Sbjct: 634 AIDADGGLQASPRIRFNKEGSLL 656


>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9
           WD-40 repeats domain (PF00400) (6 weak)
          Length = 1120

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +1

Query: 280 AIDADGXLTVEPEISLNKVGHAL 348
           AIDADG L   P I  NK G  L
Sbjct: 634 AIDADGGLQASPRIRFNKEGSLL 656


>At1g73810.1 68414.m08546 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 418

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 270 RRGSHRRRWXSYSRTGDFIKQGRSR 344
           RRG H R++   S TG+F+++ R+R
Sbjct: 355 RRGPHPRKYTRRSVTGEFLRRVRNR 379


>At2g46340.1 68415.m05768 phytochrome A supressor spa1 (SPA1)
           identical to phytochrome A supressor spa1 (GI:4809171)
           [Arabidopsis thaliana]; contains 8 WD-40 repeats (Pfam
           PF00400) (1 weak)
          Length = 1029

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = +3

Query: 486 GSTSRRNILYTEPTPP---VGFWIALEEATVXN 575
           GS++ RN+  T+P PP    G  +++EE T+ N
Sbjct: 51  GSSAHRNVDLTKPPPPEEAAGAKLSVEELTLGN 83


>At1g52570.1 68414.m05935 phospholipase D alpha 2 / PLD alpha 2
           (PLDALPHA2) (PLD2) / choline phosphatase 2 identical to
           phospholipase D alpha 2 ( PLD alpha 2) SP:Q9SSQ9 from
           [Arabidopsis thaliana]
          Length = 810

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
 Frame = +2

Query: 65  IKSQLITDGYAILEDFLHVAECDEIKAAGLEFTENLPDIEERATFSTTEKTHLKDKYF-- 238
           I + LI  GY  +ED LH  E D      ++  +N     E+   +   K H+K +YF  
Sbjct: 101 IGATLIGRGYIPVEDILHGEEVDR----WVDILDN-----EKNPIAGGSKIHVKLQYFGV 151

Query: 239 -LESNDR*GVSSKREPSTPMXILQSNR 316
             + N   G+ S + P  P       R
Sbjct: 152 EKDKNWNRGIKSAKFPGVPYTFFSQRR 178


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,646,970
Number of Sequences: 28952
Number of extensions: 248492
Number of successful extensions: 645
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)