Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0893
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz...    32   0.089
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ...    29   0.83 
SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|c...    29   0.83 
SPCC1223.12c |meu10||GPI anchored cell surface protein |Schizosa...    26   5.9  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    26   7.8  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    26   7.8  

>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 322

 Score = 32.3 bits (70), Expect = 0.089
 Identities = 26/126 (20%), Positives = 53/126 (42%), Gaps = 6/126 (4%)
 Frame = +2

Query: 221 AFHWSPVQ--HQSLRTIYEKHDR----NVVVFSENKYWEFSPSFRLMRRGSLTDYSIPDN 382
           +F WS V      + +I EK ++    ++    +++Y+   P+  L+++ S T+ S    
Sbjct: 50  SFEWSNVSILEGDIDSIKEKTEKTKLSSLFYAGKHEYFCVYPNASLIKQNSTTEPSYDLQ 109

Query: 383 VTELTTVFISNYNNRTYLIEEERYWRYDELTGTMDEDYPKDMRHGGTYRTLSMLLLFGKK 562
              +      N     +LIE   YW YD + G     Y  + + G      + + + G  
Sbjct: 110 ELRIQGTEKINELANVFLIENRGYWTYDYVYGQHVRQYHLEPQQGSDKVLANPMYILGTA 169

Query: 563 THSSSK 580
            ++ +K
Sbjct: 170 PNTQTK 175


>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 314

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +2

Query: 230 WSPVQHQSLRTIYEKHDRNVVVFSENKYWEFSPSFRLMRRGSLTDYSIPDNVTELTTVFI 409
           W   +   L ++  K + N +VFS N+YW  + +   +R   + D    + V ELT  F+
Sbjct: 219 WDLNESTHLYSLEAKANINALVFSPNRYWLCAATGSSIR---IFDLETQEKVDELTVDFV 275


>SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
 Frame = +3

Query: 27  VGSSQAPRFTKTDSEEFDDAPDLCMTNYDTLQVIHGKIYVFEEEWVTVLRDRNVREPGYP 206
           V  SQ    TK   EE  +AP     N  TL      + + E+E  T+L D     PG  
Sbjct: 304 VKDSQGSHQTKVTIEENMEAPSHQAANRTTLT--DSPLGIVEDE-TTILTDLEPSGPGLQ 360

Query: 207 KRFHELFIGLPSSIKVY--GPSMRNTI 281
           KR  E  +    S+  Y  G  +RN +
Sbjct: 361 KRASETSMSTNVSLPYYQNGRRVRNIL 387


>SPCC1223.12c |meu10||GPI anchored cell surface protein
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 416

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -3

Query: 408 MNTVVNSVTLSGME*SVREPRLIRRNDGLNSQYLFSEKTTTFR 280
           + TV  S+  +G   SV  P+L     GLN Q   S+ T  FR
Sbjct: 292 LKTVAGSIDFTGNFSSVELPKLRDVKGGLNIQTTSSDFTCPFR 334


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 15/60 (25%), Positives = 22/60 (36%)
 Frame = -1

Query: 608 LLSKRQKRGPWKKNVSSFQTIAASTGYGTSRHVAYPLGNLHPSYRLVRRTANTFPPRSDM 429
           LLSK      W        +      Y   R++ Y + + H  Y    +     PPRSD+
Sbjct: 686 LLSKPALTSEWLYFFDQLHSQCYKGNYELWRYIPYSIIHFHYLYATPEKCRLPHPPRSDL 745


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 394 DHSVHIQLQQQDISDRGGKVLAVRRTNR 477
           DHS HI++   D S    K+++VR T R
Sbjct: 35  DHSNHIKVSHFDPSSYKQKLVSVRETQR 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,604,791
Number of Sequences: 5004
Number of extensions: 79975
Number of successful extensions: 209
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)