Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0893
         (848 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040645-1|AAB94973.1|  377|Caenorhabditis elegans Hypothetical ...    30   2.4  
Z95309-1|CAB08559.2|  446|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AF106589-7|AAN73853.1|  843|Caenorhabditis elegans Hypothetical ...    29   3.2  
AF106589-6|AAN73852.1|  841|Caenorhabditis elegans Hypothetical ...    29   3.2  
Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical pr...    28   9.6  
Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical pr...    28   9.6  
Z66520-8|CAE17837.1|  357|Caenorhabditis elegans Hypothetical pr...    28   9.6  
AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protei...    28   9.6  

>AF040645-1|AAB94973.1|  377|Caenorhabditis elegans Hypothetical
           protein F52C6.5 protein.
          Length = 377

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = +2

Query: 302 ENKYWEFSPSFRLMRRGSLTDYSIPDNVTELTTVFISNYNNRTYLIEEER 451
           E K W F   F  M+  +++D+ +  + ++ + V   N+ N + L+E+ER
Sbjct: 60  ETKKWTFQTKFT-MKLVAVSDFPVSQHDSDNSFVLKHNFKNISRLVEDER 108


>Z95309-1|CAB08559.2|  446|Caenorhabditis elegans Hypothetical
           protein H36L18.1 protein.
          Length = 446

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +1

Query: 499 KGYATWRDVPYPVDAAIVWKE-DTFFFQGPRFWRFDNNLVRAHEYYPLPTAQIWF 660
           K Y ++++ P  +DAA       +F F   ++W+   + +R  + +P   ++ WF
Sbjct: 389 KIYISFQNSPPEIDAAFQLNNTSSFLFHQNKYWKVSGDPMRIEKGFPRSLSRDWF 443


>AF106589-7|AAN73853.1|  843|Caenorhabditis elegans Hypothetical
           protein Y44E3A.6b protein.
          Length = 843

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 132 RV*LARCRSWSCIGRARHRTPR 67
           +V L  C+SW C+GR R  T R
Sbjct: 324 KVALYECQSWKCLGRIRFETTR 345


>AF106589-6|AAN73852.1|  841|Caenorhabditis elegans Hypothetical
           protein Y44E3A.6a protein.
          Length = 841

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 132 RV*LARCRSWSCIGRARHRTPR 67
           +V L  C+SW C+GR R  T R
Sbjct: 324 KVALYECQSWKCLGRIRFETTR 345


>Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical
           protein F29G6.3c protein.
          Length = 1453

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 607 NLVRAHEYYPLPTAQIWFRLRIQLRNDLTTPSTT 708
           N+ R H Y PL T Q+  +  I+ R++   P TT
Sbjct: 818 NITREHHYIPLKTEQVQSKTEIE-RHNQYVPMTT 850


>Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical
           protein F29G6.3b protein.
          Length = 1785

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 607 NLVRAHEYYPLPTAQIWFRLRIQLRNDLTTPSTT 708
           N+ R H Y PL T Q+  +  I+ R++   P TT
Sbjct: 818 NITREHHYIPLKTEQVQSKTEIE-RHNQYVPMTT 850


>Z66520-8|CAE17837.1|  357|Caenorhabditis elegans Hypothetical
           protein F49E12.12 protein.
          Length = 357

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 374 PDNVTELTTVFISNYNNRTYLIEEERYWRYDELTGTMDEDYP 499
           PDN TEL   + S+Y N+T +        YDE    M+  +P
Sbjct: 53  PDNYTELERSYRSDYTNKTEI-------SYDEAIAAMNPSHP 87


>AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protein 4
           protein.
          Length = 741

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = -1

Query: 614 TRLLSKRQKRGPWKKNVSSF--QTIAASTGYGTSRHVAYPLGNLHPSYRLVRRTANTF 447
           T +L ++QKRG W  N+  F  Q     T +     + +  GN    YR   R  N F
Sbjct: 230 TPMLLQKQKRGDWYANIEKFGGQKFFLQTKFDGENVLLHKKGN---EYRWFTRNNNDF 284


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,352,388
Number of Sequences: 27780
Number of extensions: 465686
Number of successful extensions: 1302
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1302
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)