Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0893
         (848 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.7  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   2.7  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    23   3.6  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   4.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   8.2  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   8.2  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   8.2  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 544 AIVWKEDTFFFQG 582
           A +WK DT+F+ G
Sbjct: 83  ARIWKPDTYFYNG 95


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -1

Query: 629 YSCARTRLLSKRQKRGPWKKNVSSFQTIAASTGYGTSRHVAY 504
           Y+C RT  ++       W  +   FQTI   T  G SR   Y
Sbjct: 172 YNCKRTATITAATDCQLWAIDRQCFQTIMMRT--GLSRQAEY 211


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 693 SKVISKLDSQSKPYLCGRERVVLV 622
           SK I+  ++   P++C RERV  V
Sbjct: 156 SKRITASEALKHPWICQRERVASV 179


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 649 QIWFRLRIQLRNDLTTPST 705
           Q W  LR+ L ++LT  ST
Sbjct: 154 QTWHDLRVALTSELTAAST 172


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 416 YNNRTYLIEEERYWRYDELTGTMDEDY 496
           +   T  +E  R W   + T T D+DY
Sbjct: 349 FQKNTTGLERSRSWSSLDNTNTNDQDY 375


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = +1

Query: 550 VWKEDTFFFQG 582
           +W+ DT+F+ G
Sbjct: 117 IWRPDTYFYNG 127


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 574 FQGPRFWRFDNNLVRAHEYYPLP 642
           F+  R WR  NNL     +YP P
Sbjct: 213 FRNSRSWRITNNL-----FYPYP 230


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 246,754
Number of Sequences: 438
Number of extensions: 6387
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)