Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0893
         (848 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11964.1 68416.m01479 S1 RNA-binding domain-containing protei...    31   0.97 
At5g21080.1 68418.m02510 expressed protein predicted proteins - ...    29   3.0  
At3g61780.1 68416.m06931 expressed protein ; expression supporte...    28   6.8  
At2g17300.1 68415.m01998 expressed protein                             28   9.0  

>At3g11964.1 68416.m01479 S1 RNA-binding domain-containing protein
            similar to SP|Q05022 rRNA biogenesis protein RRP5
            {Saccharomyces cerevisiae}; contains Pfam profile
            PF00575: S1 RNA binding domain
          Length = 1838

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 63   DSEEFDDAPDLCMTNYDTLQVIHGKIYVFEEEWVTVLRDRNV 188
            DS EF+D  +     +   Q + G +Y  ++EWV +   RNV
Sbjct: 1053 DSSEFNDTQESEQLEFAAGQCVIGYVYKVDKEWVWLAVSRNV 1094


>At5g21080.1 68418.m02510 expressed protein predicted proteins -
           Arabidopsis thaliana; expression supported by MPSS
          Length = 980

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/21 (57%), Positives = 18/21 (85%)
 Frame = +2

Query: 530 TLSMLLLFGKKTHSSSKVLVF 592
           T S++LLFG+  HSS++VLV+
Sbjct: 624 TFSLVLLFGRTKHSSNEVLVW 644


>At3g61780.1 68416.m06931 expressed protein ; expression supported
           by MPSS
          Length = 1121

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 8/58 (13%)
 Frame = +2

Query: 302 ENKYWEFSPSFRLMRRGSLTDYSI--------PDNVTELTTVFISNYNNRTYLIEEER 451
           EN Y EF P    MR G   +Y          P  + E+  ++ S YN+    +++E+
Sbjct: 633 ENNYHEFEPVVEKMRAGFRDNYMAAREGETREPGTIAEIAELYRSEYNDELEWMKDEK 690


>At2g17300.1 68415.m01998 expressed protein 
          Length = 139

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 652 IWFRLRIQLRNDLTTPSTTGPLSCRH 729
           ++F+LR ++R  L   S + PLSC+H
Sbjct: 111 VFFKLRSEIRRLLRPSSDSLPLSCKH 136


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,150,596
Number of Sequences: 28952
Number of extensions: 436199
Number of successful extensions: 1174
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)