Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0892
         (792 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0889 - 32532495-32533832,32533919-32534151,32534321-325344...    31   0.79 
08_02_0958 - 23044708-23046045,23046131-23046363,23047059-230471...    31   1.4  
08_02_0956 + 23026108-23027146,23027255-23027395,23029334-230295...    31   1.4  
04_01_0099 + 1029785-1030039,1030269-1030357,1030484-1030541,103...    30   1.8  
05_02_0148 - 7085892-7086011,7086681-7087004,7088258-7088419,708...    29   4.2  
09_06_0008 - 20168429-20170054                                         28   7.4  
02_04_0499 - 23485707-23485822,23485899-23486112,23486464-234865...    28   7.4  

>02_05_0889 -
           32532495-32533832,32533919-32534151,32534321-32534461,
           32534564-32535521
          Length = 889

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +1

Query: 238 FPREASGGAEWLELSKGTDITEAFESHHLNSSVNKVLEKYYVRE 369
           F ++  GGA+ + ++ GTD TE F++ H +     +LE Y + E
Sbjct: 544 FLKDHPGGADSIMINAGTDCTEEFDAIH-SDKARGLLEMYRIGE 586


>08_02_0958 -
           23044708-23046045,23046131-23046363,23047059-23047199,
           23047296-23048334
          Length = 916

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +1

Query: 238 FPREASGGAEWLELSKGTDITEAFESHHLNSSVNKVLEKYYVREAKT 378
           F ++  GGA+ + ++ GTD TE F++ H +     +L+ Y + E  T
Sbjct: 572 FLKDHPGGADSILINAGTDCTEEFDAIH-SDKAKALLDTYRIGELIT 617


>08_02_0956 +
           23026108-23027146,23027255-23027395,23029334-23029566,
           23029652-23030989
          Length = 916

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +1

Query: 238 FPREASGGAEWLELSKGTDITEAFESHHLNSSVNKVLEKYYVREAKT 378
           F ++  GGA+ + ++ GTD TE F++ H +     +L+ Y + E  T
Sbjct: 572 FLKDHPGGADSILINAGTDCTEEFDAIH-SDKAKALLDTYRIGELIT 617


>04_01_0099 +
           1029785-1030039,1030269-1030357,1030484-1030541,
           1030643-1030960,1031043-1031165,1031698-1031901,
           1031982-1032041
          Length = 368

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +3

Query: 561 VVMSAYLIASLSLAWVTVAAHNYIHRKTNWRMYLFNLSLWS 683
           ++ SA+  AS SL W  V  H Y +R   W M+L  L L+S
Sbjct: 7   LLRSAFGKASPSLGWFIVNPHRYSYRW--WHMFLIMLVLYS 45


>05_02_0148 -
           7085892-7086011,7086681-7087004,7088258-7088419,
           7088866-7089066,7089148-7089332,7089459-7089588
          Length = 373

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 492 DHRWSLATLLISSAVSCWANDYWVVMSAYLIASLSLAWVTVAAHNYIHR-KTNWRMYLFN 668
           D ++S+  +L+  AV C   D   V S  LIA++   W T    +Y+H  +  + +  FN
Sbjct: 130 DTKFSIMVVLVGVAV-CTVTDV-SVNSQGLIAAIIAVWSTALQQHYVHHLQRKYSLGSFN 187

Query: 669 L 671
           L
Sbjct: 188 L 188


>09_06_0008 - 20168429-20170054
          Length = 541

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 21/71 (29%), Positives = 31/71 (43%)
 Frame = +3

Query: 501 WSLATLLISSAVSCWANDYWVVMSAYLIASLSLAWVTVAAHNYIHRKTNWRMYLFNLSLW 680
           WSL  L + S +S     +W  +   L   L+     VAA   + + T+  +Y+F  SL 
Sbjct: 280 WSLVRLSVHSCMSVCLEWWWYEIMVLLCGVLADPKAAVAAMGVLIQTTS-LIYIFPHSLG 338

Query: 681 SYRDFRVSHAL 713
                RV H L
Sbjct: 339 CAVSTRVGHEL 349


>02_04_0499 -
           23485707-23485822,23485899-23486112,23486464-23486511,
           23486609-23486695,23486808-23486945,23487159-23487389,
           23488524-23489504
          Length = 604

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 669 LSLWSYRDFRVSHALSHHLYPNTLYGFRS*RIEPLVI 779
           L+ + Y      HA++HHL   TL   RS RI P V+
Sbjct: 210 LARYGYSGGDAVHAVAHHLADLTLLDRRSLRIPPSVV 246


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,708,177
Number of Sequences: 37544
Number of extensions: 433393
Number of successful extensions: 1054
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)