Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0892
         (792 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50309-5|AAG24135.1|  339|Caenorhabditis elegans Seven tm recept...    31   1.2  
AF016451-7|AAB66003.2|  312|Caenorhabditis elegans Serpentine re...    29   2.9  
Z78539-6|CAB01732.2|  134|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z49911-9|CAA90133.1|  682|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U58753-5|AAC24434.2|  348|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>U50309-5|AAG24135.1|  339|Caenorhabditis elegans Seven tm receptor
           protein 90 protein.
          Length = 339

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -1

Query: 414 SIIFKSKR*IPRCFSFPDVIFLENFIHRRIEVMTFEGFCDIGTLRELQPLR 262
           S+ +K+     +  S+PD++F  N +      M    FC I T R+L+ LR
Sbjct: 181 SLYYKTDDSGAKAISWPDILFAVNVVKLISICMIIVLFCGISTFRKLRTLR 231


>AF016451-7|AAB66003.2|  312|Caenorhabditis elegans Serpentine
           receptor, class t protein64 protein.
          Length = 312

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 504 SLATLLISSAVSCWAN-DYWVVMSAYLIASLSLAWVTVAAHNYI 632
           ++ T  ++  ++ W N + W  M+ Y +ASL+  W+  +  N+I
Sbjct: 226 TILTTYMALLITFWHNAESWFKMTNYTLASLNCVWILFSHLNFI 269


>Z78539-6|CAB01732.2|  134|Caenorhabditis elegans Hypothetical
           protein C31E10.7 protein.
          Length = 134

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = +1

Query: 238 FPREASGGAEWLELSKGTDITEAFESHHLNSSVNKVLEKYYVREAKTPRNSPFTFE 405
           F  E  GG E L    G+D TEAFE    ++    + ++Y + E        ++++
Sbjct: 35  FLDEHPGGCEVLLEQAGSDGTEAFEDVGHSTDARHMKDEYLIGEVVASERKTYSYD 90


>Z49911-9|CAA90133.1|  682|Caenorhabditis elegans Hypothetical
           protein M28.7 protein.
          Length = 682

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +1

Query: 430 KRAVVEELKKVPKHIPSYADMIIDGLSRLCLYLQRFH 540
           KR V+ ++  VPK   SY D + D +    LYL  FH
Sbjct: 505 KRRVLVQVMDVPKDKVSYVDSLPDVIVFNALYLPFFH 541


>U58753-5|AAC24434.2|  348|Caenorhabditis elegans Hypothetical
           protein W03B1.6 protein.
          Length = 348

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +1

Query: 343 VLEKYYVREAKTPRNSPFTFEDDGFYRTLKRAVVEELKKVPKH 471
           VL +Y+   +  P+N   +F+DD FY+ +K   ++ L  + KH
Sbjct: 188 VLARYFSVGSPAPKNVT-SFDDDPFYQVMKEQTLKLLSSI-KH 228


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,616,641
Number of Sequences: 27780
Number of extensions: 373275
Number of successful extensions: 1040
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)