Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0892
         (792 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    25   0.61 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   0.61 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.61 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   1.1  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             25   1.1  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    24   1.4  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    24   1.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    24   1.4  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    24   1.4  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   5.7  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 25.4 bits (53), Expect = 0.61
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 525 SSAVSCWANDYWVVMSAYLI 584
           ++ +SCW N Y++V+ A+ I
Sbjct: 66  AAVMSCWMNVYYIVILAWAI 85


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.4 bits (53), Expect = 0.61
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 6/32 (18%)
 Frame = +3

Query: 534 VSCWANDYWVVMSA----YLIASL--SLAWVT 611
           +SCW N Y++++ A    YL+ SL   L W T
Sbjct: 107 LSCWTNIYYIIILAWALFYLLVSLRIDLPWRT 138


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 25.4 bits (53), Expect = 0.61
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 6/32 (18%)
 Frame = +3

Query: 534 VSCWANDYWVVMSA----YLIASL--SLAWVT 611
           +SCW N Y++++ A    YL+ SL   L W T
Sbjct: 160 LSCWTNIYYIIILAWALFYLLVSLRIDLPWRT 191


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +3

Query: 618 AHNYIHRKTNWRMYL-FNLSLWSYRDFR 698
           AH  I+++    +YL F+L+L S+RDFR
Sbjct: 248 AHQSINKEARSNLYLPFHLTL-SFRDFR 274


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +3

Query: 618 AHNYIHRKTNWRMYL-FNLSLWSYRDFR 698
           AH  I+++    +YL F+L+L S+RDFR
Sbjct: 243 AHQSINKEARSNLYLPFHLTL-SFRDFR 269


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 409 DGFYRTLKRAVVEELKKV 462
           DG+Y+TL+ A+   +KKV
Sbjct: 82  DGWYQTLQSAISAHMKKV 99


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 409 DGFYRTLKRAVVEELKKV 462
           DG+Y+TL+ A+   +KKV
Sbjct: 82  DGWYQTLQSAISAHMKKV 99


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 375 FSFPDVIFLENFIHRRIEVMTFEGFCDIGTL 283
           F  P+VIFL+  + +   VM    F + G+L
Sbjct: 691 FEHPNVIFLQGVVTKSNPVMIITEFMENGSL 721


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 409 DGFYRTLKRAVVEELKKV 462
           DG+Y+TL+ A+   +KKV
Sbjct: 82  DGWYQTLQSAISAHMKKV 99


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -3

Query: 592 NEAIKYADITTQ*SLAQHETAEDISKVARDHR*SYQRN*GY 470
           NE+ KYA  +       H+     S+ +R+ R S  RN  Y
Sbjct: 205 NESKKYATSSNSLRNRTHDFQHTSSRYSRERRCSRDRNREY 245


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,537
Number of Sequences: 438
Number of extensions: 4882
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)