Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0892
         (792 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77760.1 68414.m09053 nitrate reductase 1 (NR1) identical to ...    34   0.12 
At1g37130.1 68414.m04639 nitrate reductase 2 (NR2) identical to ...    33   0.22 
At4g22970.1 68417.m03315 peptidase C50 family protein contains P...    29   2.7  
At5g10150.1 68418.m01175 expressed protein                             28   6.2  
At2g38510.1 68415.m04732 MATE efflux protein-related contains Pf...    28   6.2  
At1g78730.1 68414.m09176 F-box family protein contains F-box dom...    28   6.2  

>At1g77760.1 68414.m09053 nitrate reductase 1 (NR1) identical to
           SP|P11832 Nitrate reductase 1 (formerly EC 1.6.6.1)
           (NR1){Arabidopsis thaliana}
          Length = 917

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +1

Query: 238 FPREASGGAEWLELSKGTDITEAFESHHLNSSVNKVLEKYYVREAKT 378
           F ++  GG + + ++ GTD TE FE+ H +    K+LE Y + E  T
Sbjct: 576 FLKDHPGGTDSILINAGTDCTEEFEAIH-SDKAKKLLEDYRIGELIT 621


>At1g37130.1 68414.m04639 nitrate reductase 2 (NR2) identical to
           SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1)
           (NR2) {Arabidopsis thaliana}
          Length = 917

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +1

Query: 238 FPREASGGAEWLELSKGTDITEAFESHHLNSSVNKVLEKYYVREAKT 378
           F  +  GG++ + ++ GTD TE FE+ H +    K+LE Y + E  T
Sbjct: 573 FLMDHPGGSDSILINAGTDCTEEFEAIH-SDKAKKMLEDYRIGELIT 618


>At4g22970.1 68417.m03315 peptidase C50 family protein contains Pfam
            PF03568: Peptidase family C50
          Length = 1773

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +1

Query: 301  EAFESHHLNSSVNKVLEKYYVREAKTPRNSPFTFEDDG 414
            E  ES  LN+ V+++L   Y+  +    NS FTFE DG
Sbjct: 1160 EVTESGSLNNLVSRLLASLYLLSSS---NSEFTFESDG 1194


>At5g10150.1 68418.m01175 expressed protein
          Length = 414

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +1

Query: 283 KGTDITEAFESHHLN----SSVNKVLEKYYVREAKTPRNSPFTFEDDGFY 420
           KG++IT+ F+  H+N     S+ +  +   +R    P+N   +F+D   Y
Sbjct: 129 KGSEITDKFQEVHVNRPLSGSIQEAPKSRLLRSKLKPQNRTASFDDAELY 178


>At2g38510.1 68415.m04732 MATE efflux protein-related contains Pfam
           profile PF01554: Uncharacterized membrane protein family
          Length = 486

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/71 (28%), Positives = 32/71 (45%)
 Frame = +3

Query: 501 WSLATLLISSAVSCWANDYWVVMSAYLIASLSLAWVTVAAHNYIHRKTNWRMYLFNLSLW 680
           W L +L   SA+S     +W  +  +L   L     +VAA   + + T   +Y+   ++ 
Sbjct: 230 WPLLSLAAPSAISVCLEYWWYEIMLFLCGLLGNPKASVAAMGILIQTTG-ILYVVPFAIS 288

Query: 681 SYRDFRVSHAL 713
           S    RV HAL
Sbjct: 289 SAIATRVGHAL 299


>At1g78730.1 68414.m09176 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 420

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/28 (42%), Positives = 21/28 (75%)
 Frame = +3

Query: 39  LKMLNILK*LIEEQQKRKLMSVFLNSNT 122
           L+ ++ILK ++E++ + KLMS FL  +T
Sbjct: 354 LEFVDILKPMVEKETELKLMSYFLEKST 381


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,837,963
Number of Sequences: 28952
Number of extensions: 358853
Number of successful extensions: 968
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)