Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0891
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom...    26   3.8  
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S...    26   3.8  
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    25   6.6  
SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   8.8  

>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 181 VRQVVSYDEHEPVWHSHV 234
           +R+ V YDE EP+W S +
Sbjct: 436 IRECVRYDEDEPLWISEL 453


>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 272

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 179 VRSDIESRERVPGPVTSQPESRKLRPL 99
           +  ++ S  R   PVT QP+S K++P+
Sbjct: 181 ISRNLRSSSRSISPVTEQPQSPKIQPV 207


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 200 MMSTSLSGTPMLYSLYIKRCARLYRTPSLYRRRGLLS 310
           ++ST LS + + Y ++   CA      + YR+  LLS
Sbjct: 329 LLSTHLSPSQVFYPMFEAACAFSQSPQASYRKAALLS 365


>SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 320

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 182 FDK*SR-MMSTSLSGTPMLYSLYIKRCARLYRTPS 283
           FDK S  ++ TS S   + Y  ++K CA L+R  S
Sbjct: 153 FDKKSHALVKTSDSVRSLKYGSFVKACAPLFRFAS 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,424,161
Number of Sequences: 5004
Number of extensions: 48721
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)