Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0891
         (619 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0443 - 21283680-21283940,21284044-21284118,21284620-212846...    31   0.73 
11_04_0148 - 14106513-14106599,14106787-14107014                       29   3.0  
05_03_0362 - 12973488-12974251,12975346-12975580,12976410-129767...    29   3.0  
11_02_0070 - 8004397-8004645,8004796-8004961,8005039-8005793           29   3.9  
01_07_0163 + 41578264-41578469,41578537-41579422                       27   9.0  

>05_04_0443 -
           21283680-21283940,21284044-21284118,21284620-21284649,
           21286744-21287247
          Length = 289

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -2

Query: 141 PRHVTAGVPQAPPSPRYYSVCISMIYPGLRRPIWRSSPMTPP 16
           P    A +P  PPSP   S+ +S   P L  P+  S P  PP
Sbjct: 29  PPSAAAVLPARPPSPPRASIPVSSSPPLLPPPVAGSKPQLPP 70


>11_04_0148 - 14106513-14106599,14106787-14107014
          Length = 104

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 120 VPQAPPSPRYYSVCISMIYPGLRRPIW 40
           VPQ PP  R+  VCI+++ PG+    W
Sbjct: 33  VPQCPPR-RHEDVCIAIVEPGVPEQDW 58


>05_03_0362 -
           12973488-12974251,12975346-12975580,12976410-12976738,
           12977277-12977404,12977695-12977879,12977972-12978165,
           12978239-12978368,12978507-12978566,12979037-12979059,
           12979158-12979218,12979677-12979748,12979804-12979924,
           12980351-12980415,12980973-12981089,12981970-12982239
          Length = 917

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -3

Query: 221 QTGSCSS-YETTCRTVRSDIESRERVPGPVTSQPES 117
           Q+GS SS +  + +T  SD+ES + +PG V   P+S
Sbjct: 881 QSGSGSSHFMQSSKTDDSDVESEDSMPGIVDGDPDS 916


>11_02_0070 - 8004397-8004645,8004796-8004961,8005039-8005793
          Length = 389

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +1

Query: 16  WRCHRRRAPDGSPETGVYH*YTN*IVTGRGRSLRDS-GCDVT 138
           W C R R PD  P T     Y +  V  RG + RDS G  +T
Sbjct: 140 WACRRARRPDCPPATRSLTIYRSRNVAVRGLTSRDSAGIHIT 181


>01_07_0163 + 41578264-41578469,41578537-41579422
          Length = 363

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = +3

Query: 249 SNVVPDFIERLRYIEEEGSCRNGFPPV 329
           S V  DF  RLR + E  S RNG  PV
Sbjct: 109 SGVFSDFTSRLRRLVERASERNGGKPV 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,361,127
Number of Sequences: 37544
Number of extensions: 387523
Number of successful extensions: 1133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)