Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0891
(619 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 83 4e-16
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 75 1e-13
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 63 3e-10
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 63 3e-10
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 63 3e-10
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 63 3e-10
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 63 3e-10
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 63 3e-10
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 63 3e-10
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 61 1e-09
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 59 4e-09
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 59 5e-09
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 59 5e-09
AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p pro... 58 7e-09
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 58 9e-09
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 58 9e-09
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 58 9e-09
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 58 9e-09
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 58 9e-09
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 44 2e-04
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 44 2e-04
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 40 0.002
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 31 1.2
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 31 1.2
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 82.6 bits (195), Expect = 4e-16
Identities = 41/94 (43%), Positives = 56/94 (59%)
Frame = -3
Query: 536 GXTEERNXXYRPISLLPAIGKXYEXXXXXXXXDFVSANKILIDEQFGFRARHSCVHQVHR 357
G EE YRPISLL ++ K +E D ++ +IL D QFGFR HS V QVHR
Sbjct: 505 GKPEESPESYRPISLLSSLSKLWERLIANRLNDIMTERRILPDHQFGFRQGHSTVEQVHR 564
Query: 356 LTEHXLLGLNRRKPIPTGALFFDIAKAFDKVWHN 255
LT+H L + ++ A+F D+ +AFD+VWH+
Sbjct: 565 LTKHILQAFDDKE--YCNAVFIDMQQAFDRVWHD 596
Score = 34.7 bits (76), Expect = 0.10
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -2
Query: 204 IIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQAPP-SPRYYSV 82
+++ YL +R F RV + S PR + AGVPQ P YSV
Sbjct: 613 VLKSYLEDRRFMVRVRNSYSIPRVMRAGVPQGSVLGPLLYSV 654
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 74.5 bits (175), Expect = 1e-13
Identities = 38/93 (40%), Positives = 50/93 (53%)
Frame = -3
Query: 536 GXTEERNXXYRPISLLPAIGKXYEXXXXXXXXDFVSANKILIDEQFGFRARHSCVHQVHR 357
G E YRPISLLP+I K +E + A I + QFGFRA H V Q+HR
Sbjct: 504 GKPEREPASYRPISLLPSISKVFERLIAVRIVSIMEAQGITPEHQFGFRAGHCTVEQLHR 563
Query: 356 LTEHXLLGLNRRKPIPTGALFFDIAKAFDKVWH 258
+ E L + ++ +LF DI +AFD+VWH
Sbjct: 564 VVEQILTAYDSKE--YCNSLFLDIREAFDRVWH 594
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 63.3 bits (147), Expect = 3e-10
Identities = 32/92 (34%), Positives = 46/92 (50%)
Frame = -3
Query: 536 GXTEERNXXYRPISLLPAIGKXYEXXXXXXXXDFVSANKILIDEQFGFRARHSCVHQVHR 357
G + + YRPISLL + K +E + N L QFGFR +H + QV+R
Sbjct: 500 GKDKTQPSSYRPISLLTCLSKLFEKMLLLRISPHLRINNTLPTHQFGFREKHGTIEQVNR 559
Query: 356 LTEHXLLGLNRRKPIPTGALFFDIAKAFDKVW 261
+T R+ A+F D+A+AFD+VW
Sbjct: 560 ITSEIRTAFEHREYCT--AIFLDVAQAFDRVW 589
Score = 32.7 bits (71), Expect = 0.41
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = -2
Query: 252 LIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQ 112
L++K+ + +P +++ YL NR F R + + SR + AGVPQ
Sbjct: 593 LLFKIIKL-LPQNTHKLLKSYLYNRVFAIRCDTSTSRDCAIEAGVPQ 638
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 63.3 bits (147), Expect = 3e-10
Identities = 36/93 (38%), Positives = 45/93 (48%)
Frame = -3
Query: 536 GXTEERNXXYRPISLLPAIGKXYEXXXXXXXXDFVSANKILIDEQFGFRARHSCVHQVHR 357
G T YRPISLLP++GK E K + QFGFR +H Q+HR
Sbjct: 308 GKTPTDVDSYRPISLLPSLGKIMERLILNRLLTCKDVTKAIPKFQFGFRLQHGTPEQLHR 367
Query: 356 LTEHXLLGLNRRKPIPTGALFFDIAKAFDKVWH 258
+ L + K GA F DI +AFD+VWH
Sbjct: 368 VVNFALEAM-ENKEYAVGA-FLDIQQAFDRVWH 398
Score = 41.1 bits (92), Expect = 0.001
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = -2
Query: 252 LIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQAPP-SPRYYSVCI 76
L+YK + P +L L+++ +L R+F V+G +S + + AGVPQ P YSV
Sbjct: 401 LLYKAKRL-FPPQLYLVVKSFLEERTFHVSVDGYKSSIKPIAAGVPQGSVLGPTLYSVFA 459
Query: 75 S 73
S
Sbjct: 460 S 460
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 63.3 bits (147), Expect = 3e-10
Identities = 32/92 (34%), Positives = 46/92 (50%)
Frame = -3
Query: 536 GXTEERNXXYRPISLLPAIGKXYEXXXXXXXXDFVSANKILIDEQFGFRARHSCVHQVHR 357
G + + YRPISLL + K +E + N L QFGFR +H + QV+R
Sbjct: 500 GKDKTQPSSYRPISLLTCLSKLFEKMLLLRISPHLRINNTLPTHQFGFREKHGTIEQVNR 559
Query: 356 LTEHXLLGLNRRKPIPTGALFFDIAKAFDKVW 261
+T R+ A+F D+A+AFD+VW
Sbjct: 560 ITSEIRTAFEHREYCT--AIFLDVAQAFDRVW 589
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -2
Query: 252 LIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQ 112
L++K+ + +P +++ YL N F R + + SR + AGVPQ
Sbjct: 593 LLFKIIKL-LPQNTHKLLKSYLYNTVFAIRCDTSTSRDCAIEAGVPQ 638
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 62.9 bits (146), Expect = 3e-10
Identities = 33/85 (38%), Positives = 43/85 (50%)
Frame = -3
Query: 509 YRPISLLPAIGKXYEXXXXXXXXDFVSANKILIDEQFGFRARHSCVHQVHRLTEHXLLGL 330
YRPISLL + K E D S K + QFGFR H HQ+ R+T+ L
Sbjct: 114 YRPISLLSGLSKLLERILLKRLYDIDSFAKAIPSHQFGFRKDHGAEHQLARVTQFILKAF 173
Query: 329 NRRKPIPTGALFFDIAKAFDKVWHN 255
+ + A F DI +AFD+VWH+
Sbjct: 174 DEKD--VCSATFLDITEAFDRVWHD 196
Score = 44.8 bits (101), Expect = 9e-05
Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Frame = -2
Query: 252 LIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEG-TRSRPRHVTAGVPQAP-PSPRYYSVC 79
L+YKL + +P L ++ +YLSNR+F R++G T SR ++ AGVPQ P YS+
Sbjct: 198 LLYKLSRL-IPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYSIY 256
Query: 78 IS-MIYP 61
S M YP
Sbjct: 257 SSDMPYP 263
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 62.9 bits (146), Expect = 3e-10
Identities = 33/85 (38%), Positives = 43/85 (50%)
Frame = -3
Query: 509 YRPISLLPAIGKXYEXXXXXXXXDFVSANKILIDEQFGFRARHSCVHQVHRLTEHXLLGL 330
YRPISLL + K E D S K + QFGFR H HQ+ R+T+ L
Sbjct: 561 YRPISLLSGLSKLLERILPKRLYDIDSFAKAIPSHQFGFRKDHGAEHQLARVTQFILKAF 620
Query: 329 NRRKPIPTGALFFDIAKAFDKVWHN 255
+ + A F DI +AFD+VWH+
Sbjct: 621 DEKD--VCSATFLDITEAFDRVWHD 643
Score = 44.8 bits (101), Expect = 9e-05
Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Frame = -2
Query: 252 LIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEG-TRSRPRHVTAGVPQAP-PSPRYYSVC 79
L+YKL + +P L ++ +YLSNR+F R++G T SR ++ AGVPQ P YS+
Sbjct: 645 LLYKLSRL-IPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYSIY 703
Query: 78 IS-MIYP 61
S M YP
Sbjct: 704 SSDMPYP 710
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 62.9 bits (146), Expect = 3e-10
Identities = 33/85 (38%), Positives = 43/85 (50%)
Frame = -3
Query: 509 YRPISLLPAIGKXYEXXXXXXXXDFVSANKILIDEQFGFRARHSCVHQVHRLTEHXLLGL 330
YRPISLL + K E D S K + QFGFR H HQ+ R+T+ L
Sbjct: 561 YRPISLLSGLSKLLERILLKRLYDIDSFAKAIPSHQFGFRKDHGAEHQLARVTQFILKAF 620
Query: 329 NRRKPIPTGALFFDIAKAFDKVWHN 255
+ + A F DI +AFD+VWH+
Sbjct: 621 DEKD--VCSATFLDITEAFDRVWHD 643
Score = 44.8 bits (101), Expect = 9e-05
Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Frame = -2
Query: 252 LIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEG-TRSRPRHVTAGVPQAP-PSPRYYSVC 79
L+YKL + +P L ++ +YLSNR+F R++G T SR ++ AGVPQ P YS+
Sbjct: 645 LLYKLSRL-IPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYSIY 703
Query: 78 IS-MIYP 61
S M YP
Sbjct: 704 SSDMPYP 710
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 62.9 bits (146), Expect = 3e-10
Identities = 33/85 (38%), Positives = 43/85 (50%)
Frame = -3
Query: 509 YRPISLLPAIGKXYEXXXXXXXXDFVSANKILIDEQFGFRARHSCVHQVHRLTEHXLLGL 330
YRPISLL + K E D S K + QFGFR H HQ+ R+T+ L
Sbjct: 561 YRPISLLSGLSKLLERILLKRLYDIDSFAKAIPSHQFGFRKDHGAEHQLARVTQFILKAF 620
Query: 329 NRRKPIPTGALFFDIAKAFDKVWHN 255
+ + A F DI +AFD+VWH+
Sbjct: 621 DEKD--VCSATFLDITEAFDRVWHD 643
Score = 44.8 bits (101), Expect = 9e-05
Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Frame = -2
Query: 252 LIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEG-TRSRPRHVTAGVPQAP-PSPRYYSVC 79
L+YKL + +P L ++ +YLSNR+F R++G T SR ++ AGVPQ P YS+
Sbjct: 645 LLYKLSRL-IPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYSIY 703
Query: 78 IS-MIYP 61
S M YP
Sbjct: 704 SSDMPYP 710
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 61.3 bits (142), Expect = 1e-09
Identities = 35/93 (37%), Positives = 44/93 (47%)
Frame = -3
Query: 536 GXTEERNXXYRPISLLPAIGKXYEXXXXXXXXDFVSANKILIDEQFGFRARHSCVHQVHR 357
G T YRP SLLP++GK E K + QFGFR +H Q+HR
Sbjct: 506 GKTPTDVDSYRPTSLLPSLGKIMERLILNRLLTCKDVTKAIPKFQFGFRLQHGTPEQLHR 565
Query: 356 LTEHXLLGLNRRKPIPTGALFFDIAKAFDKVWH 258
+ L + K GA F DI +AFD+VWH
Sbjct: 566 VVNFALEAM-ENKEYAVGA-FLDIQQAFDRVWH 596
Score = 41.1 bits (92), Expect = 0.001
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = -2
Query: 252 LIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQAPP-SPRYYSVCI 76
L+YK + P +L L+++ +L R+F V+G +S + + AGVPQ P YSV
Sbjct: 599 LLYKAKRL-FPPQLYLVVKSFLEERTFHVSVDGYKSSIKPIAAGVPQGSVLGPTLYSVFA 657
Query: 75 S 73
S
Sbjct: 658 S 658
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 59.3 bits (137), Expect = 4e-09
Identities = 31/83 (37%), Positives = 43/83 (51%)
Frame = -3
Query: 509 YRPISLLPAIGKXYEXXXXXXXXDFVSANKILIDEQFGFRARHSCVHQVHRLTEHXLLGL 330
YRPISLL I K +E + + I+ QFGFR H + QV+R+T
Sbjct: 511 YRPISLLSCISKLFEKCLLIRLNQHQTYHNIIPAHQFGFRESHGTIEQVNRITTEIRTAF 570
Query: 329 NRRKPIPTGALFFDIAKAFDKVW 261
R+ A+F D+++AFDKVW
Sbjct: 571 EYREYCT--AVFLDVSQAFDKVW 591
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -2
Query: 252 LIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQ 112
L++K+ + +P+ +++ YL +R F R S + AGVPQ
Sbjct: 595 LMFKI-KISLPESTHKLLKSYLYDRKFAVRCNTATSTVHTIEAGVPQ 640
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 58.8 bits (136), Expect = 5e-09
Identities = 32/93 (34%), Positives = 45/93 (48%)
Frame = -3
Query: 536 GXTEERNXXYRPISLLPAIGKXYEXXXXXXXXDFVSANKILIDEQFGFRARHSCVHQVHR 357
G + YRPISLL + K +E K + QFGFR H Q+ R
Sbjct: 549 GKSANEPRSYRPISLLSGLSKIFERLLLKRLFKVDLFKKAIPLHQFGFRKEHGSEQQIAR 608
Query: 356 LTEHXLLGLNRRKPIPTGALFFDIAKAFDKVWH 258
+T+ L R++ A+F DI++AFD+VWH
Sbjct: 609 VTQFILEAFERKEYC--SAVFLDISEAFDRVWH 639
Score = 37.9 bits (84), Expect = 0.011
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Frame = -2
Query: 252 LIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVE-GTRSRPRHVTAGVPQAPP-SPRYYSVC 79
L+ KL + +P L +I+ YL+NR+F + + G SR + AGVPQ P YS+
Sbjct: 642 LLLKLAKI-LPYNLYIILESYLTNRTFEVKDQAGETSRTGQIGAGVPQGSNLGPLLYSIF 700
Query: 78 IS-MIYPGLRRP 46
S M P + RP
Sbjct: 701 SSDMPLPYIYRP 712
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 58.8 bits (136), Expect = 5e-09
Identities = 32/93 (34%), Positives = 45/93 (48%)
Frame = -3
Query: 536 GXTEERNXXYRPISLLPAIGKXYEXXXXXXXXDFVSANKILIDEQFGFRARHSCVHQVHR 357
G + YRPISLL + K +E K + QFGFR H Q+ R
Sbjct: 561 GKSSNEPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRKEHGTEQQIAR 620
Query: 356 LTEHXLLGLNRRKPIPTGALFFDIAKAFDKVWH 258
+T+ L R++ A+F DI++AFD+VWH
Sbjct: 621 VTQFILEAFERKEYC--SAVFLDISEAFDRVWH 651
Score = 37.9 bits (84), Expect = 0.011
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Frame = -2
Query: 252 LIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVE-GTRSRPRHVTAGVPQAPP-SPRYYSVC 79
L+ KL + +P L +I+ YL+NR+F + + G SR + AGVPQ P YS+
Sbjct: 654 LLLKLAKI-LPYNLYIILESYLTNRTFEVKDQAGETSRTGQIGAGVPQGSNLGPLLYSIF 712
Query: 78 IS-MIYPGLRRP 46
S M P + RP
Sbjct: 713 SSDMPLPYIYRP 724
>AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p
protein.
Length = 241
Score = 58.4 bits (135), Expect = 7e-09
Identities = 30/83 (36%), Positives = 42/83 (50%)
Frame = -3
Query: 509 YRPISLLPAIGKXYEXXXXXXXXDFVSANKILIDEQFGFRARHSCVHQVHRLTEHXLLGL 330
YRPISLL + K +E + + L QF F A+H + QV+R+T
Sbjct: 50 YRPISLLTCLSKLFEKGLLLRISPHLKTHNTLPSYQFDFPAKHGAIEQVNRITTEIRTAF 109
Query: 329 NRRKPIPTGALFFDIAKAFDKVW 261
R+ ALF D+A+AFD+VW
Sbjct: 110 EHREYCT--ALFLDVAQAFDRVW 130
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -2
Query: 252 LIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQ 112
L++K+ + +P + +++ YL R F R + S + AGVPQ
Sbjct: 134 LMFKIIQL-LPQNIHKLLKSYLDKRVFAVRCSSSTSSDFTIEAGVPQ 179
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 58.0 bits (134), Expect = 9e-09
Identities = 31/84 (36%), Positives = 43/84 (51%)
Frame = -3
Query: 509 YRPISLLPAIGKXYEXXXXXXXXDFVSANKILIDEQFGFRARHSCVHQVHRLTEHXLLGL 330
YRPISLL + K +E K + QFGFR H Q+ R+T+ L
Sbjct: 442 YRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRKEHGTEQQIARVTQFILEAF 501
Query: 329 NRRKPIPTGALFFDIAKAFDKVWH 258
R++ A+F DI++AFD+VWH
Sbjct: 502 ERKEYC--SAVFLDISEAFDRVWH 523
Score = 35.9 bits (79), Expect = 0.044
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Frame = -2
Query: 252 LIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVE-GTRSRPRHVTAGVPQAPP-SPRYYSVC 79
L+ KL + +P L +I+ YL+NR+F + + G SR + AGVPQ P YS+
Sbjct: 526 LLLKLAKI-LPYNLYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIF 584
Query: 78 IS-MIYPGLRRP 46
S M P + P
Sbjct: 585 SSDMPLPHIYHP 596
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 58.0 bits (134), Expect = 9e-09
Identities = 31/84 (36%), Positives = 43/84 (51%)
Frame = -3
Query: 509 YRPISLLPAIGKXYEXXXXXXXXDFVSANKILIDEQFGFRARHSCVHQVHRLTEHXLLGL 330
YRPISLL + K +E K + QFGFR H Q+ R+T+ L
Sbjct: 558 YRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRKEHGTEQQIARVTQFILEAF 617
Query: 329 NRRKPIPTGALFFDIAKAFDKVWH 258
R++ A+F DI++AFD+VWH
Sbjct: 618 ERKEYC--SAVFLDISEAFDRVWH 639
Score = 35.9 bits (79), Expect = 0.044
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Frame = -2
Query: 252 LIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVE-GTRSRPRHVTAGVPQAPP-SPRYYSVC 79
L+ KL + +P L +I+ YL+NR+F + + G SR + AGVPQ P YS+
Sbjct: 642 LLLKLAKI-LPYNLYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIF 700
Query: 78 IS-MIYPGLRRP 46
S M P + P
Sbjct: 701 SSDMPLPHIYHP 712
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 58.0 bits (134), Expect = 9e-09
Identities = 31/84 (36%), Positives = 43/84 (51%)
Frame = -3
Query: 509 YRPISLLPAIGKXYEXXXXXXXXDFVSANKILIDEQFGFRARHSCVHQVHRLTEHXLLGL 330
YRPISLL + K +E K + QFGFR H Q+ R+T+ L
Sbjct: 558 YRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRKEHGTEQQIARVTQFILEAF 617
Query: 329 NRRKPIPTGALFFDIAKAFDKVWH 258
R++ A+F DI++AFD+VWH
Sbjct: 618 ERKEYC--SAVFLDISEAFDRVWH 639
Score = 35.9 bits (79), Expect = 0.044
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Frame = -2
Query: 252 LIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVE-GTRSRPRHVTAGVPQAPP-SPRYYSVC 79
L+ KL + +P L +I+ YL+NR+F + + G SR + AGVPQ P YS+
Sbjct: 642 LLLKLAKI-LPYNLYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIF 700
Query: 78 IS-MIYPGLRRP 46
S M P + P
Sbjct: 701 SSDMPLPHIYHP 712
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 58.0 bits (134), Expect = 9e-09
Identities = 31/84 (36%), Positives = 43/84 (51%)
Frame = -3
Query: 509 YRPISLLPAIGKXYEXXXXXXXXDFVSANKILIDEQFGFRARHSCVHQVHRLTEHXLLGL 330
YRPISLL + K +E K + QFGFR H Q+ R+T+ L
Sbjct: 520 YRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRKEHGTEQQIARVTQFILEAF 579
Query: 329 NRRKPIPTGALFFDIAKAFDKVWH 258
R++ A+F DI++AFD+VWH
Sbjct: 580 ERKEYC--SAVFLDISEAFDRVWH 601
Score = 35.9 bits (79), Expect = 0.044
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Frame = -2
Query: 252 LIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVE-GTRSRPRHVTAGVPQAPP-SPRYYSVC 79
L+ KL + +P L +I+ YL+NR+F + + G SR + AGVPQ P YS+
Sbjct: 604 LLLKLAKI-LPYNLYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIF 662
Query: 78 IS-MIYPGLRRP 46
S M P + P
Sbjct: 663 SSDMPLPHIYHP 674
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 58.0 bits (134), Expect = 9e-09
Identities = 31/84 (36%), Positives = 43/84 (51%)
Frame = -3
Query: 509 YRPISLLPAIGKXYEXXXXXXXXDFVSANKILIDEQFGFRARHSCVHQVHRLTEHXLLGL 330
YRPISLL + K +E K + QFGFR H Q+ R+T+ L
Sbjct: 558 YRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRKEHGTEQQIARVTQFILEAF 617
Query: 329 NRRKPIPTGALFFDIAKAFDKVWH 258
R++ A+F DI++AFD+VWH
Sbjct: 618 ERKEYC--SAVFLDISEAFDRVWH 639
Score = 35.9 bits (79), Expect = 0.044
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Frame = -2
Query: 252 LIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVE-GTRSRPRHVTAGVPQAPP-SPRYYSVC 79
L+ KL + +P L +I+ YL+NR+F + + G SR + AGVPQ P YS+
Sbjct: 642 LLLKLAKI-LPYNLYIILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIF 700
Query: 78 IS-MIYPGLRRP 46
S M P + P
Sbjct: 701 SSDMPLPHIYHP 712
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 44.0 bits (99), Expect = 2e-04
Identities = 26/94 (27%), Positives = 41/94 (43%)
Frame = -3
Query: 536 GXTEERNXXYRPISLLPAIGKXYEXXXXXXXXDFVSANKILIDEQFGFRARHSCVHQVHR 357
G + YRPISLL + K E F+ + L Q+GFR + + +
Sbjct: 529 GKPPDNPESYRPISLLSGLSKILEKLIKLRLVKFLDIHNTLPTVQYGFRNGLNTILPTLK 588
Query: 356 LTEHXLLGLNRRKPIPTGALFFDIAKAFDKVWHN 255
L + + ++ + G + DI AFD VWH+
Sbjct: 589 LRNYIKESIQSKQSV--GLVTLDIEAAFDTVWHD 620
Score = 38.3 bits (85), Expect = 0.008
Identities = 17/47 (36%), Positives = 31/47 (65%)
Frame = -2
Query: 252 LIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQ 112
L++KL +G P L+ I++++L++R F + ++S R + AGVPQ
Sbjct: 622 LLHKLKMIGTPIYLIKIVQNFLTHRYFSVNLNSSQSARRILNAGVPQ 668
Score = 29.1 bits (62), Expect = 5.0
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -1
Query: 79 YINDIPRSPETHLALFADDTAIY 11
+ +DIP++ L+LFADD A+Y
Sbjct: 680 FTHDIPQATNCVLSLFADDAAVY 702
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 44.0 bits (99), Expect = 2e-04
Identities = 26/94 (27%), Positives = 41/94 (43%)
Frame = -3
Query: 536 GXTEERNXXYRPISLLPAIGKXYEXXXXXXXXDFVSANKILIDEQFGFRARHSCVHQVHR 357
G + YRPISLL + K E F+ + L Q+GFR + + +
Sbjct: 477 GKPPDNPESYRPISLLSGLSKILEKLIKLRLVKFLDIHNTLPTVQYGFRNGLNTILPTLK 536
Query: 356 LTEHXLLGLNRRKPIPTGALFFDIAKAFDKVWHN 255
L + + ++ + G + DI AFD VWH+
Sbjct: 537 LRNYIKESIQSKQSV--GLVTLDIEAAFDTVWHD 568
Score = 38.3 bits (85), Expect = 0.008
Identities = 17/47 (36%), Positives = 31/47 (65%)
Frame = -2
Query: 252 LIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQ 112
L++KL +G P L+ I++++L++R F + ++S R + AGVPQ
Sbjct: 570 LLHKLKMIGTPIYLIKIVQNFLTHRYFSVNLNSSQSARRILNAGVPQ 616
Score = 29.1 bits (62), Expect = 5.0
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -1
Query: 79 YINDIPRSPETHLALFADDTAIY 11
+ +DIP++ L+LFADD A+Y
Sbjct: 628 FTHDIPQATNCVLSLFADDAAVY 650
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 40.3 bits (90), Expect = 0.002
Identities = 23/82 (28%), Positives = 38/82 (46%)
Frame = -3
Query: 509 YRPISLLPAIGKXYEXXXXXXXXDFVSANKILIDEQFGFRARHSCVHQVHRLTEHXLLGL 330
YRPISLL +GK E F+ + ++ Q F++ HS + + R+ L
Sbjct: 513 YRPISLLSCLGKTLEKIIAQRLTWFIKRHNLISHNQVAFKSNHSTMDALLRIQHFASNAL 572
Query: 329 NRRKPIPTGALFFDIAKAFDKV 264
+ + + L D +AFD+V
Sbjct: 573 STKNHV--SILATDFERAFDRV 592
Score = 37.5 bits (83), Expect = 0.014
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = -2
Query: 252 LIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQAPP 103
++ +L G+ RL +I+ +++NRSFR R+ S + G+PQ P
Sbjct: 597 VLCRLERWGIGPRLYNLIKAFMTNRSFRVRINNVTSNSHILHNGIPQGSP 646
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 31.1 bits (67), Expect = 1.2
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Frame = -3
Query: 509 YRPISLLPAIGKXYEXXXXXXXXDFVSANKILIDEQFGFRARHS---CVHQVHRLTEHXL 339
YRPISL I K + V+ N ++ D+QFGF+ S C+ V L
Sbjct: 508 YRPISLNCCIAKILDKIIAKRLWWLVTYNNLINDKQFGFKKGKSTSDCLLYVDYLI---- 563
Query: 338 LGLNRRKPIPTGALFFDIAKAFDKV 264
+ + T + D ++AFD+V
Sbjct: 564 ----TKSKMHTSLVTLDFSRAFDRV 584
Score = 29.9 bits (64), Expect = 2.9
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -2
Query: 252 LIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQAPP 103
+I +L +++ I++++SNR RV S P + G+PQ P
Sbjct: 589 IIQQLQEWKTGPKIIKYIKNFMSNRKITVRVGPHTSSPLPLFNGIPQGSP 638
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -2
Query: 234 NMGVPDRLVLIIRDYLSNRSFRYRVE-GTRSRPRHVTAGVPQ 112
N+GVPD + +I +Y +R Y E G RS V+AGVPQ
Sbjct: 576 NLGVPDYIRGVIGNYFRDRVLWYVTEDGPRS--HQVSAGVPQ 615
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -3
Query: 509 YRPISLLPAIGKXYEXXXXXXXXDFVSANKILIDEQFGFRARHSCVHQVHRLTE 348
YRP+ LL +GK +E + L +Q+GFR S + + +T+
Sbjct: 479 YRPLCLLDIVGKLFERILYARIELITESPTGLQGQQYGFRKGKSTLDALKSVTD 532
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,154,043
Number of Sequences: 53049
Number of extensions: 621135
Number of successful extensions: 1639
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1618
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2538517050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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