Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0891
         (619 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    44   7e-05
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    44   7e-05
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    44   9e-05
U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    42   5e-04
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    40   0.001
U97593-6|AAB52879.2|  925|Caenorhabditis elegans Prion-like-(q/n...    29   3.5  
U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n...    29   3.5  
AF039043-9|AAB94196.1|  427|Caenorhabditis elegans Tetraspanin f...    28   6.1  
AF039043-8|AAL02514.1|  451|Caenorhabditis elegans Tetraspanin f...    28   6.1  
U40030-6|AAA81135.3|  431|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U40030-5|AAR12976.2|  506|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
           transcriptase protein.
          Length = 1066

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 30/84 (35%), Positives = 38/84 (45%)
 Frame = -3

Query: 509 YRPISLLPAIGKXYEXXXXXXXXDFVSANKILIDEQFGFRARHSCVHQVHRLTEHXLLGL 330
           YRPI LLP + K +            S ++    EQ GFR   S +  +H L    LL +
Sbjct: 623 YRPICLLPVLYKVFTKCLLNRMRR--SLDEAQPVEQAGFRRSFSTIDHIHSLQR--LLEV 678

Query: 329 NRRKPIPTGALFFDIAKAFDKVWH 258
            R   IP   +F D  KAFD V H
Sbjct: 679 GREYQIPLTLVFIDFKKAFDSVEH 702


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 30/84 (35%), Positives = 38/84 (45%)
 Frame = -3

Query: 509 YRPISLLPAIGKXYEXXXXXXXXDFVSANKILIDEQFGFRARHSCVHQVHRLTEHXLLGL 330
           YRPI LLP + K +            S ++    EQ GFR   S +  +H L    LL +
Sbjct: 362 YRPICLLPVLYKVFTKCLLNRMRR--SLDEAQPVEQAGFRRSFSTIDHIHSLQR--LLEV 417

Query: 329 NRRKPIPTGALFFDIAKAFDKVWH 258
            R   IP   +F D  KAFD V H
Sbjct: 418 GREYQIPLTLVFIDFKKAFDSVEH 441


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 30/84 (35%), Positives = 38/84 (45%)
 Frame = -3

Query: 509 YRPISLLPAIGKXYEXXXXXXXXDFVSANKILIDEQFGFRARHSCVHQVHRLTEHXLLGL 330
           YRPI LLP + K +            S ++    EQ GFR   S +  +H L    LL +
Sbjct: 452 YRPICLLPVLYKVFTKCLLNRMRR--SLDEAQPVEQAGFRRSFSTIDHIHSLQR--LLEV 507

Query: 329 NRRKPIPTGALFFDIAKAFDKVWH 258
            R   IP   +F D  KAFD V H
Sbjct: 508 GREYQIPLTLVFIDFKKAFDTVEH 531


>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
 Frame = -2

Query: 252 LIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQ-APPSPRYYSVCI 76
           L+ KL ++     L++ + ++LSNRSFR R+  T S  +  T GVPQ A  SP  + + +
Sbjct: 33  LLDKLVSLRKNKNLLIWVNEFLSNRSFRVRIGQTLSSRKFATCGVPQGAVLSPLLFGIYV 92

Query: 75  SMI 67
           + I
Sbjct: 93  NDI 95


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
 Frame = -3

Query: 509 YRPISLLPAIGKXYEXXXXXXXXDFVSANKILIDEQFGFRARHSCVHQVHRLTEHXLLGL 330
           YRPISLL  I K  E        + + +       Q GF+  HS    V ++T   + GL
Sbjct: 405 YRPISLLSPIAKLLEKAILKRIKNSIESPA----HQHGFKPEHSTTTAVIQVTNDIIGGL 460

Query: 329 NRRKPIPTGALF--FDIAKAFDKV 264
           N + P P  A+    D+  AFDKV
Sbjct: 461 NMKNP-PERAIMACLDLRAAFDKV 483


>U97593-6|AAB52879.2|  925|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform c protein.
          Length = 925

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 384 TLVRPSSAPPHGAHXTRAEQAETHSDRSPLLRYS 283
           T  RP+S+P    H   AE A  H+++S +  ++
Sbjct: 107 TAYRPASSPAPANHPVHAENAREHAEKSKVFTHN 140


>U97593-5|AAB52880.1| 1175|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform a protein.
          Length = 1175

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 384 TLVRPSSAPPHGAHXTRAEQAETHSDRSPLLRYS 283
           T  RP+S+P    H   AE A  H+++S +  ++
Sbjct: 226 TAYRPASSPAPANHPVHAENAREHAEKSKVFTHN 259


>AF039043-9|AAB94196.1|  427|Caenorhabditis elegans Tetraspanin
           family protein 14,isoform a protein.
          Length = 427

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 213 ACLALP-CYTVCISNVVPDFIERLRYIEEEGSCRN 314
           A L +P C +VC++N++   ++  RY+ E  + RN
Sbjct: 270 ALLIVPVCISVCLTNILAKQVDHQRYLLEREARRN 304


>AF039043-8|AAL02514.1|  451|Caenorhabditis elegans Tetraspanin
           family protein 14,isoform b protein.
          Length = 451

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 213 ACLALP-CYTVCISNVVPDFIERLRYIEEEGSCRN 314
           A L +P C +VC++N++   ++  RY+ E  + RN
Sbjct: 294 ALLIVPVCISVCLTNILAKQVDHQRYLLEREARRN 328


>U40030-6|AAA81135.3|  431|Caenorhabditis elegans Hypothetical
           protein T13C2.3a protein.
          Length = 431

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -3

Query: 218 TGSCSSYETTCRTVRSDIESRERVPGPVTSQPESRKLRPLPVTI 87
           T + +S  TT  T  ++  +      P T+ PE  K  PLP  I
Sbjct: 320 TSTTTSTTTTTTTTTTEEPTTTTTSAPTTTTPEPSKYPPLPPQI 363


>U40030-5|AAR12976.2|  506|Caenorhabditis elegans Hypothetical
           protein T13C2.3b protein.
          Length = 506

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -3

Query: 218 TGSCSSYETTCRTVRSDIESRERVPGPVTSQPESRKLRPLPVTI 87
           T + +S  TT  T  ++  +      P T+ PE  K  PLP  I
Sbjct: 395 TSTTTSTTTTTTTTTTEEPTTTTTSAPTTTTPEPSKYPPLPPQI 438


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,946,629
Number of Sequences: 27780
Number of extensions: 304707
Number of successful extensions: 787
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)