Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0891
         (619 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11130.1 68418.m01300 exostosin family protein contains Pfam ...    28   4.3  
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi...    28   5.7  
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex...    28   5.7  
At1g49475.1 68414.m05545 transcriptional factor B3 family protei...    28   5.7  
At3g44670.1 68416.m04804 disease resistance protein RPP1-Ws[A,C]...    27   7.5  
At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protei...    27   10.0 
At3g09100.2 68416.m01070 mRNA capping enzyme family protein simi...    27   10.0 
At3g09100.1 68416.m01071 mRNA capping enzyme family protein simi...    27   10.0 

>At5g11130.1 68418.m01300 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 336

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 255 RLIYKLYNMGVPDRLVLIIRDYLSNRSFRY 166
           R +Y+ Y     DRL  I++DY+S  S RY
Sbjct: 66  RFVYRPYTSYARDRLQNIVKDYISLISNRY 95


>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
           PF00076 RNA recognition motif
          Length = 636

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 372 PSSAPPHGAHXTRAEQAETHSDRSPLLRYSE 280
           P+   P G H  RA +    SDR+P  R+S+
Sbjct: 571 PARGAPRGRHSDRAPRGGRFSDRAPRGRHSD 601


>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 826

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = -2

Query: 168 YRVEGTRSRPRHVTAGVPQAPPSPRYYSVCISMIYPGLRRPIWRSSPMTPP 16
           Y+   +   P +     P  PP P YY+V      P +  P   +SP  PP
Sbjct: 601 YQYTSSPPPPTYYATQSPPPPPPPTYYAVQSPPPPPPVYYPPVTASPPPPP 651


>At1g49475.1 68414.m05545 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 250

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 170 DIESRERVPGPVTSQPESRKLRPLP 96
           ++ +  R PGP+TS    R+L+P P
Sbjct: 3   NMHTNRRSPGPITSAATQRRLKPEP 27


>At3g44670.1 68416.m04804 disease resistance protein
           RPP1-Ws[A,C]-like (TIR-NBS-LRR class), putative domain
           signature TIR-NBS-LRR exists, suggestive of a disease
           resistance protein. Closest Col-0 homolog to both RPP1
           Ws-A and RPP1 Ws-C
          Length = 872

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +2

Query: 203 MSTSLSGTPMLYSLYIKRCARLYRTPSLYRRRGLLSEWVSACSALVXCAP 352
           + +S+     L  LY++RC+ L   PS      L   ++  CS+L    P
Sbjct: 408 LPSSIEKLTSLQRLYLQRCSSLVELPSFGNATKLEELYLENCSSLEKLPP 457


>At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protein
           40S RIBOSOMAL PROTEINs - different species
          Length = 182

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 273 R*SLAQRLIYKLYNMGV-PDRLVLIIRDYLSNRSF 172
           R  +   L+ KLYNMGV P R  L + + LS  SF
Sbjct: 70  RIQMTDMLLEKLYNMGVIPTRKSLTLTERLSVSSF 104


>At3g09100.2 68416.m01070 mRNA capping enzyme family protein similar
           to mRNA capping enzyme [Xenopus laevis] GI:7239232;
           contains Pfam profiles PF01331: mRNA capping enzyme
           catalytic domain, PF00782: Dual specificity phosphatase
           catalytic domain
          Length = 672

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -2

Query: 264 LAQRLIYKLYNMGVPDRLVLIIRD--YLSNRSFRYRVEGTRSRPRHVTAGV 118
           L QR  Y  +       ++L+  D  Y+ +RSFR+R    R   RH T G+
Sbjct: 366 LRQRYYYATWKADGTRYMMLLTTDGCYIVDRSFRFRRVQMRFPFRHPTEGI 416


>At3g09100.1 68416.m01071 mRNA capping enzyme family protein similar
           to mRNA capping enzyme [Xenopus laevis] GI:7239232;
           contains Pfam profiles PF01331: mRNA capping enzyme
           catalytic domain, PF00782: Dual specificity phosphatase
           catalytic domain
          Length = 471

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -2

Query: 264 LAQRLIYKLYNMGVPDRLVLIIRD--YLSNRSFRYRVEGTRSRPRHVTAGV 118
           L QR  Y  +       ++L+  D  Y+ +RSFR+R    R   RH T G+
Sbjct: 366 LRQRYYYATWKADGTRYMMLLTTDGCYIVDRSFRFRRVQMRFPFRHPTEGI 416


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,160,466
Number of Sequences: 28952
Number of extensions: 279012
Number of successful extensions: 782
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)