Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0890
         (829 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    28   1.9  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    26   7.5  
SPAC12B10.07 |acp1||F-actin capping protein alpha subunit|Schizo...    26   7.5  
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    26   7.5  
SPAC23G3.11 |rpn6||19S proteasome regulatory subunit Rpn6|Schizo...    25   9.9  
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    25   9.9  
SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Sch...    25   9.9  

>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 401 LDERKDQRRHVRLRFYCRVLPQNRLQGSLPARSL 502
           LDER +  R++R   Y + L +  ++  LP RS+
Sbjct: 69  LDERSEMVRYLRASGYAKFLEKYLIEEELPVRSI 102


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
            Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 82   VFTKEPMVNLDMKMKELCIMKLLDHILQPTMFEDIKEIAKEYNIE 216
            + TK  + + D K+K       +++ L P+    I  IAK+YN E
Sbjct: 1174 IMTKSVIEHTDKKVK----FWFIENFLSPSFKSSIPAIAKKYNFE 1214


>SPAC12B10.07 |acp1||F-actin capping protein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
 Frame = +1

Query: 151 DHILQPTMFEDIKEI--AKEYNIEKSCDKYMNVDVVNSSWRCI 273
           DH L    F  IK+    + + I     KY   +  N SWRCI
Sbjct: 116 DHYLSDVTFGIIKKSDEVESFTIVLVSSKYNPKNYWNGSWRCI 158


>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 193 IAKEYNIEKSCDKYMNVDVVNSSWRC 270
           + KE+N    C++Y    V N  W+C
Sbjct: 431 LPKEFNPHSFCNQYKGFAVGNRFWQC 456


>SPAC23G3.11 |rpn6||19S proteasome regulatory subunit
           Rpn6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -2

Query: 681 RFGIKERRTPXRQSITTKLSSV 616
           ++ IKE+RT  RQ++ TKL S+
Sbjct: 113 KWAIKEKRTFLRQALETKLISL 134


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = +2

Query: 593 WKYY-GITVTDDNLVVIDWR 649
           W Y  GI V DD + + DWR
Sbjct: 317 WNYLSGIAVLDDRIAMHDWR 336


>SPBC577.05c |rec27|mug41|meiotic recombination protein
           Rec27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 9/36 (25%), Positives = 22/36 (61%)
 Frame = +1

Query: 103 VNLDMKMKELCIMKLLDHILQPTMFEDIKEIAKEYN 210
           VNL  K  ++   ++++H+L+    ++I+   K+Y+
Sbjct: 12  VNLKKKQLQITSSEIIEHVLEELNLKNIERRVKKYD 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,005,926
Number of Sequences: 5004
Number of extensions: 57345
Number of successful extensions: 156
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)