Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0890
         (829 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00630.1 68417.m00087 K+ efflux antiporter, putative (KEA2) M...    30   1.6  
At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-conta...    30   2.2  
At1g01790.1 68414.m00098 K+ efflux antiporter, putative (KEA1) i...    30   2.2  
At2g27110.2 68415.m03258 far-red impaired responsive protein, pu...    29   3.8  
At2g27110.1 68415.m03257 far-red impaired responsive protein, pu...    29   3.8  
At3g14970.1 68416.m01893 zinc finger (C3HC4-type RING finger) fa...    28   8.7  
At1g14950.1 68414.m01786 major latex protein-related / MLP-relat...    28   8.7  

>At4g00630.1 68417.m00087 K+ efflux antiporter, putative (KEA2)
           Monovalent cation:proton antiporter family 2 (CPA2
           family) member, PMID:11500563; similar to
           SWISS-PROT:SPP03819 Glutathione-regulated
           potassium-efflux system protein kefC (K(+)/H(+)
           antiporter) [Escherichia coli]
          Length = 627

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = +1

Query: 97  PMVNLDMKMKELCIMKLLDHILQPTMFEDI--KEIAKEYNIEKSCDKYMNVDVVNSSWRC 270
           P V LD+    + I + LD    P  F D   +E+  +   +++C   + +D   +++RC
Sbjct: 453 PFVALDVSSDRVAIGRSLD---LPVYFGDAGSREVLHKIGADRACAAAIALDTPGANYRC 509

Query: 271 IRWACSR 291
           + WA S+
Sbjct: 510 V-WALSK 515


>At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-containing
            protein contains Pfam profile PF00226: DnaJ domain
          Length = 2554

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = -3

Query: 494  GQVETLAVGSVEAR--GSKSVDEHASVDPFSHPARSPHENIEV 372
            G+ ET++ G V+A   GS  V+E  S DP S P ++P E + +
Sbjct: 2332 GRRETMSSGEVKAEEIGSDGVNE--STDPSSLPGQTPQERVRL 2372


>At1g01790.1 68414.m00098 K+ efflux antiporter, putative (KEA1)
           identical to GB:AAD01191 GI:4101473 from [ Arabidopsis
           thaliana]; Monovalent cation:proton antiporter family 2
           (CPA2 family) member, PMID:11500563
          Length = 618

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +1

Query: 97  PMVNLDMKMKELCIMKLLDHILQPTMFEDI--KEIAKEYNIEKSCDKYMNVDVVNSSWRC 270
           P V LD+    + I + LD    P  F D   KE+  +    ++C   + +D   +++RC
Sbjct: 445 PFVALDVSSDRVTIGRSLD---LPVYFGDAGSKEVLHKIGAGRACAAVVALDAPGANYRC 501

Query: 271 IRWACSR 291
           + WA S+
Sbjct: 502 V-WALSK 507


>At2g27110.2 68415.m03258 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
          Length = 851

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 297 ETFVHT-NELQMEEAVKVFRVLYYAKDFDVFMRTACWMRERIN 422
           ETF HT N ++ +     FRV  +  D   ++ T C+   R N
Sbjct: 495 ETFAHTANRIEDDGTTSTFRVANFENDNKAYIVTFCYPEMRAN 537


>At2g27110.1 68415.m03257 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
          Length = 851

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 297 ETFVHT-NELQMEEAVKVFRVLYYAKDFDVFMRTACWMRERIN 422
           ETF HT N ++ +     FRV  +  D   ++ T C+   R N
Sbjct: 495 ETFAHTANRIEDDGTTSTFRVANFENDNKAYIVTFCYPEMRAN 537


>At3g14970.1 68416.m01893 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 220

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 18/68 (26%), Positives = 29/68 (42%)
 Frame = +1

Query: 76  TMVFTKEPMVNLDMKMKELCIMKLLDHILQPTMFEDIKEIAKEYNIEKSCDKYMNVDVVN 255
           T  F K  + + D +  ++ +  +LD I  P   + + E+       K CDK  NV  V+
Sbjct: 66  THEFDKGLLFSGDREQIQVIVCHILDLIKAPRYIDVVTELIDAILDLKKCDKISNVKEVD 125

Query: 256 SSWRCIRW 279
                I W
Sbjct: 126 VVINVIVW 133


>At1g14950.1 68414.m01786 major latex protein-related / MLP-related
           low similarity to major latex protein {Papaver
           somniferum}[GI:294060] ; contains Pfam profile PF00407:
           Pathogenesis-related protein Bet v I family
          Length = 155

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 688 ITSFWDKRAADSLTPVNHYQIVVS 617
           +T FW+KR  DS  P+ + + V S
Sbjct: 116 VTMFWEKRYEDSPEPIKYMKFVTS 139


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,182,547
Number of Sequences: 28952
Number of extensions: 319971
Number of successful extensions: 876
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)